CN185202

Overview
NameCN185202
Unique NameCN185202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: AB8I_ARATH (UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.861e-62
Identity = 115/131 (87.79%), Postives = 127/131 (96.95%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNT+SRIISKGIS G+SRNCYRGLVQVQSKAE A+N+S CDSML+GD AAANTYPYIQVKNP+A+VEHEASTSKIGEDQLFYFQQRGID+E+A+AAMISGFCRDVFN+LPDEFGAEVNQLMS+KLEGSVG
Sbjct:  427 GKNTKSRIISKGISAGHSRNCYRGLVQVQSKAEGAKNTSTCDSMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGFCRDVFNKLPDEFGAEVNQLMSIKLEGSVG 557          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y074_SYNY3 (UPF0051 protein slr0074 OS=Synechocystis sp. (strain PCC 6803) GN=slr0074 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.257e-49
Identity = 96/131 (73.28%), Postives = 111/131 (84.73%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNTRS IISKGIS GNS N YRGLV++  KA+ ARN SQCDSML+GD AAANT+PYIQV N TA+VEHEASTSKIGEDQLFYF QRGI  E A++ ++SGFC+DV NELP EF AE ++L+SLKLEG+VG
Sbjct:  350 GKNTRSIIISKGISAGNSANSYRGLVKMGPKAQGARNYSQCDSMLIGDRAAANTFPYIQVDNNTAKVEHEASTSKIGEDQLFYFAQRGISEEDAVSMLVSGFCKDVLNELPMEFAAEADKLLSLKLEGTVG 480          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_CYAPA (UPF0051 protein ycf24 OS=Cyanophora paradoxa GN=ycf24 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 90/131 (68.70%), Postives = 113/131 (86.26%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNTRSRIISKGIS G+S+N YRGLV++  KA  ARN SQCDS+L+GD + ANT+P++Q+KNPTA+VEHEASTSKIGE+Q+FYF QRGI+ E+A++ +ISGFCR+VFN LP EF  E ++L+ LKLEGSVG
Sbjct:  356 GKNTRSRIISKGISAGHSQNSYRGLVKIGPKAVGARNYSQCDSLLIGDNSQANTFPHLQIKNPTAKVEHEASTSKIGEEQIFYFLQRGINAEEAISLIISGFCREVFNNLPMEFALEADKLLGLKLEGSVG 486          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_PORYE (UPF0051 protein ycf24 OS=Porphyra yezoensis GN=ycf24 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.885e-47
Identity = 89/131 (67.94%), Postives = 113/131 (86.26%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            G NT+SRIISKGIS G S+N YRGLV+V  ++ N+RN SQCDS+L+G ++ ANT+PYIQV+NPT++VEHEASTSKI EDQ+FYF QRGI+ E+++A MISGFC+DVFNELP EF  E ++L+SLKLEG+VG
Sbjct:  357 GNNTKSRIISKGISAGRSKNSYRGLVKVGPQSFNSRNYSQCDSLLIGQSSQANTFPYIQVQNPTSKVEHEASTSKISEDQIFYFLQRGINLEESIALMISGFCKDVFNELPMEFATEADRLLSLKLEGTVG 487          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_ODOSI (UPF0051 protein ycf24 OS=Odontella sinensis GN=ycf24 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.885e-47
Identity = 89/131 (67.94%), Postives = 111/131 (84.73%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNTRSRI+SKGIS GNS+N YRGLV + +KA  ARN SQCDS+L+G+ + ANT+P+I V+NPTA++EHEASTSKIGE+Q+FYF QRGI  EK +  MISGFC++VF ELP EF AE ++L++LKLEGSVG
Sbjct:  356 GKNTRSRIVSKGISAGNSKNTYRGLVNISNKAIGARNYSQCDSLLIGNLSNANTFPFISVQNPTAKIEHEASTSKIGEEQIFYFLQRGIPIEKGVELMISGFCQEVFTELPLEFAAEADRLLTLKLEGSVG 486          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_PORPU (UPF0051 protein ycf24 OS=Porphyra purpurea GN=ycf24 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.393e-47
Identity = 87/131 (66.41%), Postives = 113/131 (86.26%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            G NT+S+IISKGIS G S+N YRGLV++  ++ N+RN SQCDS+L+G ++ ANT+PYIQV+NPTA+VEHEASTSKI EDQ+FYF QRGI+ E++++ MISGFC+DVFNELP EF  E ++L+SLKLEG+VG
Sbjct:  357 GNNTKSKIISKGISAGKSKNSYRGLVKIGPQSFNSRNYSQCDSLLIGQSSQANTFPYIQVQNPTAKVEHEASTSKISEDQIFYFLQRGINLEESVSLMISGFCKDVFNELPMEFAVEADRLLSLKLEGTVG 487          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: AB9I_ARATH (Putative UPF0051 protein ABCI9 OS=Arabidopsis thaliana GN=ABCI9 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.166e-46
Identity = 86/101 (85.15%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  261 KAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 563
            +AENARN+S CDSML+GD AAANTYPYIQVKNP+AR+EHEASTSKIGEDQ+FYFQQRGID+E+A+AAMISGFCRDVFN+LP+EFGAEVNQL+S+KLEGSVG
Sbjct:  370 EAENARNTSTCDSMLIGDNAAANTYPYIQVKNPSARIEHEASTSKIGEDQIFYFQQRGIDHERALAAMISGFCRDVFNKLPNEFGAEVNQLLSIKLEGSVG 470          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_ANTSP (UPF0051 protein in atpA 3'region (Fragment) OS=Antithamnion sp. GN=ycf24 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.286e-44
Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKNT+SRI+SKGIS G S N YRGLV++  KA  +RN SQCDS+LL +T+ ANT+PYIQ +NP  ++EHEASTSKIGE+Q+FYF QRGI+ E A++ MISGFC++V NELP EF  E ++L++LKLEG+VG
Sbjct:  167 GKNTKSRILSKGISAGYSANSYRGLVKIGPKAHYSRNYSQCDSLLLSNTSKANTFPYIQAQNPYTKIEHEASTSKIGEEQIFYFLQRGINLENAISLMISGFCKEVLNELPMEFAVEADRLLNLKLEGTVG 297          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_GALSU (UPF0051 protein in atpA 3'region (Fragment) OS=Galdieria sulphuraria GN=ycf24 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.270e-41
Identity = 80/131 (61.07%), Postives = 105/131 (80.15%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            GKN+RS+IISKGIS GNS N YRG V+V   A  ARN SQCDS+L+G+++ ANT+PYI+V N ++ +EHEAS SKI E++LFYF QRGI  E+A++ ++SGFC++VF ELP EF  E ++L+ LKLEGSVG
Sbjct:   91 GKNSRSKIISKGISTGNSINSYRGKVKVSLNASRARNYSQCDSLLIGNSSEANTFPYIEVYNRSSIIEHEASISKINEEKLFYFMQRGISIEEAISLIVSGFCKEVFTELPLEFALEADKLLGLKLEGSVG 221          
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: YCF24_GUITH (UPF0051 protein ycf24 OS=Guillardia theta GN=ycf24 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.882e-41
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  261 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 653
            G+ ++SRIISKGIS G S+N YRG V++   A  + N+SQCDSML+G  + ANTYPYIQV N  +RVEHEASTSKI E+QLFYF QRGI  E+A++ +ISGFCRDVF +LP EF  E ++L+S+KLEG+VG
Sbjct:  353 GRGSKSRIISKGISAGYSKNTYRGQVKININALGSINNSQCDSMLIGPYSQANTYPYIQVSNAMSRVEHEASTSKIEEEQLFYFLQRGISVEQAISLLISGFCRDVFVKLPMEFAVEADKLLSVKLEGTVG 483          
The following BLAST results are available for this feature:
BLAST of CN185202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB8I_ARATH1.861e-6287.79UPF0051 protein ABCI8, chloroplastic OS=Arabidopsi... [more]
Y074_SYNY35.257e-4973.28UPF0051 protein slr0074 OS=Synechocystis sp. (stra... [more]
YCF24_CYAPA7.592e-4868.70UPF0051 protein ycf24 OS=Cyanophora paradoxa GN=yc... [more]
YCF24_PORYE2.885e-4767.94UPF0051 protein ycf24 OS=Porphyra yezoensis GN=ycf... [more]
YCF24_ODOSI2.885e-4767.94UPF0051 protein ycf24 OS=Odontella sinensis GN=ycf... [more]
YCF24_PORPU8.393e-4766.41UPF0051 protein ycf24 OS=Porphyra purpurea GN=ycf2... [more]
AB9I_ARATH4.166e-4685.15Putative UPF0051 protein ABCI9 OS=Arabidopsis thal... [more]
YCF24_ANTSP2.286e-4464.12UPF0051 protein in atpA 3'region (Fragment) OS=Ant... [more]
YCF24_GALSU5.270e-4161.07UPF0051 protein in atpA 3'region (Fragment) OS=Gal... [more]
YCF24_GUITH6.882e-4162.60UPF0051 protein ycf24 OS=Guillardia theta GN=ycf24... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185202 ID=CN185202; Name=CN185202; organism=Citrus sinensis; type=EST; length=654bp
GAGGGCCAAAAGGCGATCCCATTGCCACAAAACTTCCCGAATAAATTCCA
TTAAAATTACATGTTGTTCTTGAAATAAACAAGTATGTACAAAGCTGCAA
ACATGTAGTGTGATACTACTTTTAGAACATGTTTATTTAAGTTTACAAGA
TAAACAGTACACGTCCCAACATTATGCATTTACAGCCTTTCATAATCTGG
AACTCACAGATGTATCTAAACTTTTGTAGATAAACTTGATACCAAAATTC
CTTCCCTCTAACCTACTGATCCCTCGAGTTTCAAACTCATGAGTTGGTTC
ACCTCAGCACCAAACTCATCAGGCAGCTCATTGAACACATCTCGGCAGAA
TCCAGAAATCATGGCAGCCATAGCCTTCTCATAGTCAATTCCCCTCTGCT
GAAAGTAGAAAAGCTGGTCTTCACCAATTTTTGAGGTGCTGGCTTCGTGT
TCAACACGAGCGGTAGGATTCTTCACCTGGATGTAAGGATAGGTGTTGGC
GGCAGCAGTGTCACCGAGAAGCATTGAGTCACACTGCGAGGAGTTTCGAG
CATTCTCAGCCTTTGACTGTACCTGAACAAGCCCTCTATAACAATTTCTT
GAGTTCCCAACTGAAATACCCTTAGAAATAATCCGACTCCTCGTATTCTT
CCCC
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