CN185200

Overview
NameCN185200
Unique NameCN185200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185200_ssr627 microsatellite CN185200_ssr627:627..638. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9509 contig Csv1_Contig9509:24..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.121e-36
Identity = 81/196 (41.33%), Postives = 126/196 (64.29%), Query Frame = 2
Query:   41 SKYFLILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKV---VRGQIVKIAHMTSNALALINSYASLH 610
            SK  L+  A+   + ++SA+         + +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L   +     M +++K  G+K R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   M++++TWVSAALTDETTC DGF    ++GK+   VR Q+V +A +TSNALAL+N++A+ H
Sbjct:    4 SKSTLVFSALLVILAAASAA--------PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 72/202 (35.64%), Postives = 117/202 (57.92%), Query Frame = 2
Query:   20 EKMESSSSKYFLILLAIFYHINSSSASRNVPSKITA----STEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALINS 595
            +K+  SS+   L+LLA    I +++ ++N   KIT     S   +K+ CSST YP LC+ ++A       TS K +  ASLN+T  A+  +  AV   I+K  G+ PRE  A+ DCLE + +++DEL  ++ ++    K  +     +D++T +S+A+T++ TC DGF  +  + KV    ++GQ V + HM SNALA+I +
Sbjct:   18 KKLILSSAAIALLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQ-VHVEHMCSNALAMIKN 218          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 62/202 (30.69%), Postives = 113/202 (55.94%), Query Frame = 2
Query:   11 RAREKMESSSSKYFLILLAIFYHINSSSASRNVPSKITASTEFI-KTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKA-SNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALINS 595
            +  +K+   S+   L+ +A    I++ ++  N    ++ S+  + ++SCSST YP LC  ++     +  TS K +  AS+N+T+ A+  +   V   I K  G+ PRE  A+ DCLE + +++DEL +++ ++ L            D++T +S+A+T++ TC DGF  +  + +V    ++GQI  + HM SNALA+I +
Sbjct:   15 KKNKKLVLLSAAVALLFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQI-HVEHMCSNALAMIKN 215          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 55/186 (29.57%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   56 ILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALI 589
            ++  +  H  +S    ++ +  +++   +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+ A+ ++  AV   I    G+ PRE  A+ DCLE + +++DEL  ++ ++ L     + +  + D++T +S+A+T++ TC DGF  +  + KV    ++GQ   +  M SNALA+I
Sbjct:   38 VVAGVKSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQ-KHVEKMCSNALAMI 222          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  140 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKVVRGQI----VKIAHMTSNALALINS 595
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  140 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKVVRGQI----VKIAHMTSNALALINS 595
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 52/182 (28.57%), Postives = 86/182 (47.25%), Query Frame = 2
Query:   53 LILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKVVRGQIV----KIAHMTSNALAL 586
            ++   IF  I +  + +  P      T+ I  +CS + YP LC  +L      +      L H S N TL            I+ +  M PR   A   CLE L DSVD L +++  + ++       + +D+ TW+S+A+T+  TC+DGF++    G  V+ Q++     ++ M SN LA+
Sbjct:   46 VVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQ-MPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI 223          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = 2
Query:    8 KRAREKMESSSSKYFLILL---AIFYHINSS-SASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARH-ASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNG--KVVRGQIVKIAHMTSNALALINS 595
            +R+++K+  SS    + L+   AIF  + S    +++VP      ++ I  +C  T +P LC  SL     SL  +S K L H ++N+TL            +S  + M PR   A   C+E L DSVD L +++  +    A        D+ TW+SAALT+  TC++GF+     G    +   +  ++ + SN LA+ ++
Sbjct:   39 RRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLS-FVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSSSAKP-----QDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSA 235          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = 2
Query:   86 SSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKAS-NFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKVVRGQIVKI-------AHMTSNALALINSYASLHA*LET 625
            SS +S +VP    +    +K  C +T YP+ C+ S++       T P+LL   SL V +      S+   K+  +     R  +A+  C     D++D L  SI  +G +        ++++++TW+SAALTD+ TC D      +N    RG + +I           SN+LA++     L +  ET
Sbjct:   59 SSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAI---DELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAV--GELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFET 241          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 49/205 (23.90%), Postives = 94/205 (45.85%), Query Frame = 2
Query:    2 RRKRAREKMESSSSKYFLILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKST---SAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRGQIVKIAHMTSNALALINSYAS 604
            +RK+    +  SS     +++A+   ++ + +      +IT S + IK  C+ T Y   C  +L + A    + P  L   + N T+         S  M+++ K     PR   A+  C E +  ++ EL KS  E+G  +    +  +  ++ W+SA ++ E TC DGF+    N G+ ++  +     +T N LA++   ++
Sbjct:   11 KRKKRYVIISISSVLLISMVVAVTIGVSVNKSDNAGDEEITTSVKAIKDVCAPTDYKETCEDTLRKDAK-DTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKD----PRAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVTEMSN 210          
The following BLAST results are available for this feature:
BLAST of CN185200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
21KD_DAUCA2.121e-3641.3321 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH9.241e-2435.64Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH2.130e-2030.69Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PMEU1_SOLLC1.293e-1729.57Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_CITSI2.879e-1735.22Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.879e-1735.22Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME61_ARATH1.094e-1628.57Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH1.931e-1329.06Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_PHAVU3.295e-1327.66Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME28_ARATH2.135e-1223.90Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185200 ID=CN185200; Name=CN185200; organism=Citrus sinensis; type=EST; length=727bp
GAGGAGAAAAAGAGCAAGAGAGAAAATGGAATCTTCATCATCAAAATATT
TCCTCATTTTACTAGCCATTTTTTACCACATAAACTCAAGCTCAGCATCC
AGAAATGTCCCCTCTAAAATTACAGCTAGCACTGAGTTCATCAAAACATC
TTGCAGTTCAACAACCTATCCAACACTTTGCTATAAATCCCTTGCTAGAC
ATGCAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTC
AACGTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGAT
ATCGAAAAGCCTTGGAATGAAGCCTAGAGAGGCGGAAGCCATGCAAGATT
GTTTGGAGGAGCTGAGTGATTCAGTTGATGAACTCAGAAAGTCTATTGGC
GAAATGGGTCTGATCAAAGCTTCTAACTTTGAACTCACAATGAATGATAT
ACAGACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATG
GATTTGAAAAAAATACGGTTAATGGGAAAGTCGTGAGAGGCCAGATTGTG
AAGATTGCCCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGC
TTCGCTTCATGCTTAATTAGAAACTGTGATGATGATGAGCTTCAGCATTA
ATGTTAACTCACATATGTGTATATTGTTAATCTTTTGTCGGGAAATAAAA
TTCTATTTAATAAAAAAAAAAAAAAAA
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