CN185198

Overview
NameCN185198
Unique NameCN185198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185198_ssr124 microsatellite CN185198_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2467 contig Csv1_Contig2467:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  316 VYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 753
            +Y+ GVD  GRPV+V  G  F  + +DLE+ +LY++K  +P+++  Y I YFH+  S    P L W+R +  VL  K+++NL A Y++HPTF  K   +                   +  L+  + ++QL IP ++ ++D+  NG
Sbjct:  386 LYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGDYVISYFHTLTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYDMATNG 531          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  316 VYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 753
            +Y+ GVD  GRPV+V  G  F  + +DLE+ +LY++K  +P+++  Y I YFH+  S    P L W+R +  VL  K+++NL A Y++HPTF  K   +                   +  L+  + ++QL IP ++ ++D+  NG
Sbjct:  384 LYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGDYVISYFHTLTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYDMATNG 529          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GACY_DICDI (Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 42/143 (29.37%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  334 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQH 762
            +  +Y  G D+ GR ++V++ +H  +R +D+ER +LY +   +P++++ Y +VY H+  +   +P + WM+++  +  RK+++NL  +Y++HPT  +K T+   +              D L +LF+  PREQL +P+ +  H
Sbjct:  373 LNFIYPAGKDNLGRTIIVIIASHLPVREMDMERVLLYTISIMDPVVEEEYVLVYVHTNMNNSNKPSMAWMKKVYTIFNRKYKKNLKGLYIVHPTTWIKFTLGIFKHFLSSKFWKKLTYIDDLGELFKTFPREQLALPNAIMMH 515          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_XENTR (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.003e-20
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+E+ +LY +   + +  K Y +VYFH+       PD  +++ +  ++  K+++NL A+Y +HPTF  K + +                 + L QLF  VP EQ+ IP FV  +D   NG
Sbjct:  336 LKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFIHMMDHVAAKEYVLVYFHTLTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTTFTVSGLKDKVHQVESLHQLFSAVPPEQIEIPPFVLDYDARENG 484          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_XENLA (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.426e-19
Identity = 48/149 (32.21%), Postives = 80/149 (53.69%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+E+ +LY +   + +  K Y +VYFH+        D  +++ +  ++  K+++NL A+Y +HPTF  K + +                 + L QLF  +P EQ+ IP FV  +D   NG
Sbjct:  336 LKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFIHMMDHVTAKDYVLVYFHTLTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFFTTFTVSGLKDKVHQVESLHQLFTAIPPEQIEIPPFVLDYDARENG 484          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+++ +LY +   + +  K Y +VYFH+  S     D  ++++L  V+  K++RNL A+Y +HPTF  K + +                 D L QLF  +  EQ+  P FV ++D   NG
Sbjct:  337 LKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYDARENG 485          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_NEMVE (Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 44/148 (29.73%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  316 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 759
            KI+Y+ GVD  GRPV+V V  HF  +  DL + V Y +   + ++ + Y +VYFH+ ++ + QP + +++ L  ++  K++RNL A Y++HPT   +   +                   +  L+ ++  +QL IP +V ++D++ NG
Sbjct:  340 KILYQSGVDFLGRPVVVFVARHFTAQNTDLGKAVAYFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVWARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYDMKENG 487          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+++ +LY +   + +  K Y +VYFH+  S     D  ++++L  V+  K++RNL A+Y +HPTF  K + +                 D L QLF  +  EQ+  P FV ++D   NG
Sbjct:  338 LKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYDARENG 486          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_MACFA (Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+++ +LY +   + +  K Y +VYFH+  S     D  ++++L  V+  K++RNL A+Y +HPTF  K + +                 D L QLF  +  EQ+  P FV ++D   NG
Sbjct:  301 LKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENG 449          
BLAST of CN185198 vs. ExPASy Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  316 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLXXXXXXXXXXXXDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 762
            +K +Y+ GVD+ GR VMVVVG +  +  +D+++ +LY +   + +  K Y +VYFH+  S     D  ++++L  V+  K++RNL A+Y +HPTF  K + +                 D L QLF  +  EQ+  P FV ++D   NG
Sbjct:  337 LKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENG 485          
The following BLAST results are available for this feature:
BLAST of CN185198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GDAP2_DROPS1.797e-2032.88Protein GDAP2 homolog OS=Drosophila pseudoobscura ... [more]
GDAP2_DROME1.797e-2032.88Protein GDAP2 homolog OS=Drosophila melanogaster G... [more]
GACY_DICDI2.347e-2029.37Rho GTPase-activating protein gacY OS=Dictyosteliu... [more]
GDAP2_XENTR4.003e-2033.56Ganglioside-induced differentiation-associated pro... [more]
GDAP2_XENLA4.426e-1932.21Ganglioside-induced differentiation-associated pro... [more]
GDAP2_RAT7.550e-1933.56Ganglioside-induced differentiation-associated-pro... [more]
GDAP2_NEMVE7.550e-1929.73Protein GDAP2 homolog OS=Nematostella vectensis GN... [more]
GDAP2_MOUSE9.860e-1933.56Ganglioside-induced differentiation-associated pro... [more]
GDAP2_MACFA9.860e-1933.56Ganglioside-induced differentiation-associated pro... [more]
GDAP2_HUMAN9.860e-1933.56Ganglioside-induced differentiation-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185198 ID=CN185198; Name=CN185198; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTAAGCTCAAATCACCTTCAATTATTATTTTGAGAATTATCCAA
GATGATACAAAAGGGAACCAACTTATTTCCATCAGGCACAGACAAAGATC
ATTGCTCAACATATTTAATGAAAAAATAAATAAATAAAACACTAATTGTA
CAGGAGTAAACACCCACATACAATCCCCTTCCCCTACTCAAGACAACAAA
AATGATAACAAATGAGAAATCACTGCTTCATCCCCGGGTGGTGAACTGTT
TTGTGTGATTCTTACGGTCGTTGATATACATATTTTGTTCTAGGGTCCAC
AATAAGACCCTTTCCCCCATTCACTTCCAAATCATGCTGAAAGACAAAGT
CAGGAATGGTCAACTGCTCACGAGGAACATATCGGAAGAGTTGCAGAAGC
CGATCAACATATACCACTTTCTTCCAGACCACATTGTCCACCAACAATTG
CAGTGTAAAAATGGTAGCCTTCAAGTGAAAAGTAGGGTGAAGAACATATA
TTGCATGGAGGTTGCGTTGGTGTTTCCGACCAAGTACTTGTTGTAATCTT
CTCATCCATCCCAAGTCCGGTTGCAGCTGCAGAGAAGCTGCAGAGTGAAA
ATACACAATAGAATAAGGCTTCTGAATCAAGGGCTCAAATTCCTTCACCA
CATAGAGCACAAAACGCTCAAGATCAAGACATCGTAGCAAAAAGTGCGCT
CCCACAACCACCATTACAGGACGTCCCTCGCTGTCGACTCCACCACGGTA
AACAATTTTCATCTCTG
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