CN185137

Overview
NameCN185137
Unique NameCN185137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6129 contig Csv1_Contig6129:645..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  106 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGG 318
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG
Sbjct:  234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGG 304          
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  106 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGG 318
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG
Sbjct:  234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGG 304          
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  106 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGG 318
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV  IGG
Sbjct:  235 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGG 305          
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  109 IFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGG 318
            I +ESF LTF+AEWGDR+QIATIALA   NA GV+ GA +GHTIC  +AV+GG  +A +IS++TV  IGG
Sbjct:  121 IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGG 190          
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  106 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGG 318
            P+F+++F LTF++EWGDRSQIATIA+A   N  GV +GA +GH  CT+LAV+ G  +++KI    V  IGG
Sbjct:  201 PLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGG 271          
BLAST of CN185137 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  106 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 303
            P++++ F++ FL E GDRSQI+ IA+AT  +   V  GA IGH IC+ LAVVGG +LA++IS RT+
Sbjct:  191 PVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTI 256          
The following BLAST results are available for this feature:
BLAST of CN185137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TM165_RAT2.929e-2063.38Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE2.929e-2063.38Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN2.929e-2063.38Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY37.215e-1962.86UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YD68_SCHPO1.504e-1653.52UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST4.530e-1353.03UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185137 ID=CN185137; Name=CN185137; organism=Citrus sinensis; type=EST; length=502bp
GAGGCTTGAATGCTCTTTTGGCATTCAAATATTCAGGTGGAGGAGAAACT
TGAGTCAGGGCAAGGGAAGACAACCTTCCGCCGTTTCTTCTCAAGATTCT
GTACTCCCATATTTCTAGAGTCATTTATTTTGACATTCCTGGCAGAGTGG
GGAGATCGTAGCCAGATAGCCACAATTGCTTTGGCAACACACAAAAATGC
CGTTGGAGTTGCAGTTGGGGCCACAATAGGACACACAATCTGTACATCAC
TGGCCGTGGTGGGTGGGAGCATGCTGGCGTCAAAGATTTCACAACGTACG
GTTGCTACAATAGGAGGCTTGCTCTTCCTTTGCTTTTCCTTGTCTTCATA
CTTTTACCCTCCCCTGTAAGTTTGAAATCGTAGCCTAACCTCATTCTTTT
AGAGTGTCTACGCTCTCTTTTTCAATTTTGTAATGATAAACACTGAAAAA
TGTTTTATGATAATTAATTAAGCACCAGTTTTTCTTAAAAAAAAAAAAAA
AA
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