CN185132

Overview
NameCN185132
Unique NameCN185132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185132_ssr75 microsatellite CN185132_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8244 contig Csv1_Contig8244:32..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.689e-67
Identity = 128/164 (78.05%), Postives = 139/164 (84.76%), Query Frame = 2
Query:  230 GAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL 721
            G +HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDR T LQE IVSMAV           W ND+ GRR++IL+ADFLF +GA+IMAAAPNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFL
Sbjct:    4 GIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFL 165          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.537e-55
Identity = 107/163 (65.64%), Postives = 126/163 (77.30%), Query Frame = 2
Query:  236 VHGG-GTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL 721
            V GG    D + F EC+  +WK PY++RLA SAGIGGLLFGYDTGVISGALL+I++DF  VD+KT LQ +IVSMAV           W+ND+FGRR SIL+AD LF +GA++MA AP P  +I GR+FVG GVGMASMTSPLYISEASPA+IRGALVSTNG L
Sbjct:    2 VEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLL 164          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.628e-47
Identity = 93/149 (62.42%), Postives = 113/149 (75.84%), Query Frame = 2
Query:  275 ECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL 721
            E ++ +W+ PY++RLA SAGIGGLLFGY+TGVI+GALLYI+++F  VD KT LQE IVSM V           W ND+FGRR S+L+AD LF +GA++M  A  P  +I GR+ VG GVGMASMTSPLYISE SPA+IRGALVSTNG L
Sbjct:   15 EVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLL 163          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.155e-41
Identity = 82/138 (59.42%), Postives = 108/138 (78.26%), Query Frame = 2
Query:  299 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            N Y+L L  +AGIGGLLFGYDTGVISGALLYI+DDF+ V + + LQE+IVSMA+           W+ND +GR+ + L AD +F  GA++MAAAP+P  LI+GR+ VGLGVG+AS+T+P+YI+EASP+++RG LVSTN
Sbjct:   28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTN 165          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  242 GGGTTDAS-AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            GGG  D   A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++   + +    L QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N
Sbjct:   39 GGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 193          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 67/165 (40.61%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  218 LKMEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            L  E A    G     A R  F       +V   A  + +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N
Sbjct:   21 LAAESAASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 182          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 67/165 (40.61%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  218 LKMEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            L  E A    G     A R  F       +V   A  + +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N
Sbjct:   21 LAAESAASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 182          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  317 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            + F A + GLLFG D GVI+GAL +I D+F+        QE +VS  +           W++ + GR+ S+++   LF  G++  AAAPN   LI  RV +GL VG+AS T+PLY+SE +P KIRG+++S
Sbjct:   18 VCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT---QEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMIS 144          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  317 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            + F A + GLLFG D GVI+GAL +I D+F+        QE +VS  +           W++ + GR+ S+++   LF  G++  AAAPN   LI  RV +GL VG+AS T+PLY+SE +P KIRG+++S
Sbjct:   18 VCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT---QEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMIS 144          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  275 ECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALV 703
            E F     + ++  L+  AGI GLLFGYDTGVISGAL  +  D   V   +  +E I S              W+ D  GR+  +L AD +F +G+VIMAA+ N   ++ GR  VG G+G+ S+  P+YI+E +PA++RG LV
Sbjct:   70 EGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHV-LSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLV 211          
The following BLAST results are available for this feature:
BLAST of CN185132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
INT2_ARATH8.689e-6778.05Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT4_ARATH1.537e-5565.64Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH2.628e-4762.42Probable inositol transporter 3 OS=Arabidopsis tha... [more]
INT1_ARATH2.155e-4159.42Probable inositol transporter 1 OS=Arabidopsis tha... [more]
MYCT_HUMAN1.658e-2542.41Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
MYCT_RAT5.333e-2440.61Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE5.333e-2440.61Proton myo-inositol cotransporter OS=Mus musculus ... [more]
GALP_ECOLI1.716e-2242.31Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL61.716e-2242.31Galactose-proton symporter OS=Escherichia coli O6 ... [more]
ITR2_SCHPO1.897e-2140.56Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185132 ID=CN185132; Name=CN185132; organism=Citrus sinensis; type=EST; length=722bp
GAGGCTTTCCTTCACTCACTTTCTTTCTCCCCCACCCCCAGTCCATTTTC
CCGGAAAATTTACTCACTATCACTATCATCATCATCACTCCCTTATATAG
TTATTTATAGTCCAAGTCCAACCACACCAAACCATTTTCTTGCCAAAATA
AAGAAAACAAACTCCTAAATTGTATATCTTTTAACAGATATTAATTTGTA
AAAAAAAAAAAAAAGGCCTGAAAATGGAGGGAGCAGTACATGGAGGAGGG
ACGACAGATGCGTCAGCGTTTCGAGAATGCTTCTCTTTGTCTTGGAAAAA
TCCCTACGTTCTTCGACTTGCTTTCTCTGCTGGAATTGGCGGCCTTCTCT
TTGGCTACGACACTGGAGTCATATCAGGCGCGCTACTTTATATCAGAGAT
GACTTCAAATCCGTCGATAGAAAGACTTTACTGCAGGAAAGCATAGTTAG
CATGGCTGTTGCTGGAGCAATCATTGGAGCTGCAATCGGTGGATGGATGA
ATGATCGCTTTGGAAGGAGAACTTCAATCCTTGTTGCAGATTTCCTGTTC
TTCGTTGGTGCTGTGATCATGGCTGCTGCTCCTAACCCTGGTGCCCTTAT
CACTGGACGAGTATTTGTAGGACTTGGTGTGGGAATGGCATCAATGACAT
CCCCGCTCTACATCTCTGAAGCTTCTCCAGCTAAAATTCGTGGTGCTCTT
GTTAGCACCAACGGCTTTCTTA
back to top