CN185120

Overview
NameCN185120
Unique NameCN185120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9575 contig Csv1_Contig9575:619..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.127e-86
Identity = 152/218 (69.72%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++
Sbjct:  122 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIK 339          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.127e-86
Identity = 152/218 (69.72%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++
Sbjct:  122 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIK 339          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.127e-86
Identity = 152/218 (69.72%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++
Sbjct:  122 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIK 339          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.127e-86
Identity = 152/218 (69.72%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++
Sbjct:  122 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIK 339          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 5.108e-84
Identity = 150/218 (68.81%), Postives = 174/218 (79.82%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+G RM ++DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++
Sbjct:  120 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIK 337          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.941e-83
Identity = 147/218 (67.43%), Postives = 176/218 (80.73%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 660
            FTGRK NV H  G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP  HPQ E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM      P NLGNP E ++++ A++++
Sbjct:  123 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIK 340          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 61/219 (27.85%), Postives = 100/219 (45.66%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDVVEP----LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLEL 645
            + G  +N+    G+P +   R D+ +     ++   DQ+ HLA  +       +    ++TNV GT  +L  A R G A F+  ST EVYG  L+H      W    P+   S Y   K + + L + +H   G++VR+ R  N YGPR   +  +++  F+   +    + +YGDG   R +  V D V G+  +      G  +N+G     +  EL
Sbjct:   41 YAGNPDNLAAVRGHPRYRFERGDICDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQVSTDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPE--KLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAGRVYNIGGGATLSNKEL 252          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 65/225 (28.89%), Postives = 102/225 (45.33%), Query Frame = 1
Query:    7 FTGRKENVMHHFGNPNFELIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQVV 657
            + G   N+     +P F  +R D+     +E L+   D + H A               + +N+VGT  +L  A R  +G RFL  ST EVYG           W   +P+   S Y   K  ++ L + YH+  G++V + R  N YGPR   +  +++  FV + L    + VYGDG+  R +  VSD   GL   +     G  +++G   E T LEL +++
Sbjct:   42 YGGNLRNLAEASADPRFSFVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHIG-RFLHVSTDEVYGSI-----DTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAGEVYHIGGGWEATNLELTEIL 258          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 62/222 (27.93%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   22 ENVMHHFGNPNFELIRHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETYWGN--VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGNPGEFTMLELAQ 651
            +N+   F +PNF+ ++ D+    L+        +D I H A      +   N  +  K N+ GT  +L   K  G   RF+  ST EVYG+      ++   GN   + +   + Y   K  AE L M Y R  G+ V   R  N YGP    +  +++  F+  A+  +PL ++GDG   RS+ +  D+ E   + L +GE    +N+G   E  ++++A+
Sbjct:   50 KNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGET----DEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVAR 265          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 67/223 (30.04%), Postives = 99/223 (44.39%), Query Frame = 1
Query:   43 GNPNFELIRHDVVEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----------RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVV 657
            GN +   ++ D+ +  L+       + D + + A  +        P   I+TNVVGTL +L   +          R   RFL  ST EVYG  L    K T      P    S Y   K  ++ L   +H   G+ V      N YGP    +  +++   +A+AL  EPL VYGDGKQ R + FVSD  E +  ++    VG  +N+G   E   +E+ Q +
Sbjct:   48 GNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGT-LGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAI 264          
The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UXS1_RAT7.127e-8669.72UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB7.127e-8669.72UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE7.127e-8669.72UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN7.127e-8669.72UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE5.108e-8468.81UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR1.941e-8367.43UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
STRE_STRGR2.046e-1627.85dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
ACBB_ACTS52.672e-1628.89dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
RHM2_ARATH1.123e-1427.93Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RFBB_XANCP1.123e-1430.04dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bp
GAGGTCTTCACGGGAAGGAAAGAAAACGTGATGCACCACTTTGGTAACCC
GAATTTCGAGCTCATCAGACACGACGTCGTCGAGCCTCTCTTGCTTGAAG
TCGACCAGATCTACCATCTCGCTTGTCCCGCATCTCCAGTTCATTACAAA
TTCAACCCCGTCAAGACTATTAAGACGAATGTGGTGGGAACATTGAACAT
GCTTGGATTGGCGAAGAGAGTGGGAGCGAGGTTCTTATTAACGAGTACCA
GTGAAGTATACGGTGACCCTCTTCAGCATCCACAGAAGGAGACTTACTGG
GGCAACGTCAATCCTATCGGTGTCCGAAGTTGTTACGATGAGGGAAAGCG
AACTGCTGAAACGTTGACCATGGACTACCACAGAGGAGCTGGCGTGGAGG
TTAGGATTGCTAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGAT
GATGGTCGCGTTGTCAGTAATTTTGTTGCTCAGGCTTTAAGGAAGGAGCC
TTTGACTGTATATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTT
CTGATTTGGTGGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGT
CCTTTTAATCTTGGAAATCCGGGTGAATTTACCATGCTTGAACTTGCTCA
GGTGGTCCAG
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