CN185118

Overview
NameCN185118
Unique NameCN185118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2460 contig Csv1_Contig2460:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.069e-76
Identity = 149/221 (67.42%), Postives = 173/221 (78.28%), Query Frame = 1
Query:  121 APRVMMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 783
            A RV MEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP                 MGCHARI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA+ + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEA
Sbjct:    4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEA 224          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.226e-64
Identity = 123/223 (55.16%), Postives = 157/223 (70.40%), Query Frame = 1
Query:  118 AAPRVMMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 783
            A  R +MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+FSGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP                 M CHARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EA
Sbjct:    5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEA 227          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.820e-61
Identity = 123/217 (56.68%), Postives = 154/217 (70.97%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 783
            +EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFDI+ F ++  G      +  +S++++ +L+E  KKP                 M CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV   ELL  +R WALDIA RRKPW+ S+ +TDKL  L EA
Sbjct:   11 IEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFDISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARISAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEA 227          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 73/198 (36.87%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  157 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKVSRLWALDIAARRKPWIRSL 747
            VA++T+ NPP NAL+  I+  L    ++  +   V++I++ G G  FS G DI  F  + G  D SL+ +   +L+   IE   KPI                M CH RIAA   +LGLPEL LG+IPGF GTQRLPR VG +KA+E++   + I+ +E   LGL+      E E+++ ++  A   A +    + SL
Sbjct:   12 VAVLTIHNPPANALSSRILEELSSCLDQCETDAGVRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSLLAERGQQLMER-IESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVSIGAKDEAEVIEKAKALAAKFAEKSPQTLASL 208          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1
Query:  139 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 708
            E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI  F     AG +   P V +   ++ IE  +KP+                + CH RIA  K +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D  VT +   +V+  +AL
Sbjct:    5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIREF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYKARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQ-VTEQNTCEVALEFAL 185          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.465e-25
Identity = 65/183 (35.52%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  157 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 696
            +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F         +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K ++
Sbjct:   11 LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--------AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQ 185          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_PONAB (Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  148 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 696
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F      G        ++  VV+ I+  +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S+ + +  R
Sbjct:    8 HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFSAPRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQVGLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEEAIR 183          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.262e-25
Identity = 64/183 (34.97%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  148 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 696
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F      G       +++  VV+ I+  +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S+ + +  R
Sbjct:    8 HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAPRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEEAIR 183          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 63/183 (34.43%), Postives = 104/183 (56.83%), Query Frame = 1
Query:  157 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 696
            +A+I L NPPVNA++  ++ G+K+  ++A S   +K IV++G    F  G DI+ F      G  S      +  +V+ ++  +KP+                +GCH RIA  + ++G PE+TLG++PG  GTQ LPRL+G+  A++++   + IT+ E  KLG++D VV S   EE +K ++
Sbjct:   11 LALIRLRNPPVNAISPAVIHGIKEGLQKAMSDYTIKGIVISGANNIFCAGADIHGFSAPLSFGTGS-----GLGPIVDEMQRYEKPVVAAIQGMALGGGLELSLGCHYRIAHAEARIGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHITAGEALKLGILDKVVNSAPVEEAIKFAQ 188          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: ECHP_MOUSE (Peroxisomal bifunctional enzyme OS=Mus musculus GN=Ehhadh PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22
Identity = 60/183 (32.79%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  157 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 696
            +A+I L NPPVNA++  ++  +++  ++A+    V+AIV+ G    F  G DI+ F+   G         +++  +V+ I+  +KP+                +GCH RIA  K ++G PE+ LG++PG  GTQ LPR+VG+  A++++   + I+++E  KLG++D VV S   EE +K ++
Sbjct:   11 LAMIRLCNPPVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGFKSPTG---------LTLGSLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEAIKFAQ 184          
The following BLAST results are available for this feature:
BLAST of CN185118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
MFP_ORYSJ1.069e-7667.42Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA1.226e-6455.16Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA4.820e-6156.68Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADB_BACSU7.766e-2736.87Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
ECHP_DANRE7.766e-2738.42Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
ECHP_RAT1.465e-2535.52Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
ECHP_PONAB2.498e-2534.97Peroxisomal bifunctional enzyme OS=Pongo abelii GN... [more]
ECHP_HUMAN4.262e-2534.97Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
ECHP_CAVPO8.037e-2434.43Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]
ECHP_MOUSE1.516e-2232.79Peroxisomal bifunctional enzyme OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185118 ID=CN185118; Name=CN185118; organism=Citrus sinensis; type=EST; length=784bp
GAGGAATTACCTCACGTAAACCACCGTTGTATCTTGTATGTCCTCCATTT
TTCTATTCGGATTGATAGCAAAATCTCCACTAAAAGAAATAATTGATAAT
AATAACAGTAAGCCATGGCAGCACCGCGAGTGATGATGGAAGTCGGAAAC
GACGGCGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGC
TATTCCAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCC
GAGACGACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCT
GGCGGTTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGGGGATGT
TTCGCTGATGCCCGATGTATCGGTTGAACTTGTTGTCAACTTAATTGAAG
ATTGCAAGAAGCCCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGT
GGCTTAGAATTGGCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGAC
TCAACTTGGCTTGCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAG
GCACACAACGTCTACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATG
ATGCTGTTATCTAAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCT
AATTGATGCTGTTGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCT
GGGCTTTAGACATTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCAC
AGGACAGACAAACTTGGTTCTCTTTCTGAAGCAA
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