CN185107

Overview
NameCN185107
Unique NameCN185107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC9_ARATH (Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.344e-35
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V  ++ ENAV+V+GR GCCMCHVV+ LLLG GVNPAV E+ +  E  VL EL  I V+ GGG ++ PAV+VGG+LFGGLDRVMATHISG+LVPILKE GALWL
Sbjct:   35 VRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDEEREDEVLSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGALWL 137          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS9_ORYSJ (Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica GN=GRXS9 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 72/142 (50.70%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   54 MQEAIPYRTYIHGPAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            M +AIPY      PA +   T++A         +   + V + + E  V+V+GR GCC+ HVVK LL G GVNPAV EVA   E A         V  GGG +  PAVFVGG+L GGLDR+MA HISG+LVPILKEAGALWL
Sbjct:    1 MYQAIPYNANRAWPAASRPATAAAAPPPPPPRGEE--EEVRRAVAECPVVVVGRSGCCLSHVVKRLLQGLGVNPAVHEVAGEAELA--------GVVAGGGGVALPAVFVGGRLLGGLDRLMAVHISGELVPILKEAGALWL 132          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS5_ORYSJ (Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. japonica GN=GRXS5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  120 SARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + RGG      +  A  V + + E+ VLV+GR GCC+ HVVK LL G GVNPAV EVA   EAA+        V  GG     PAVFVGGKL GGLDR+MA HISG+LVPILK+AGALWL
Sbjct:   35 AGRGGEAEVVGEEEAAEVRRAVAESPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAG--EAALKGV-----VPAGGEAAALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS3_ORYSJ (Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. japonica GN=GRXS3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD-GDEAAVLD------------ELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + V + + E  V+V+GR GCCM HV + LLLG G NPAV EV D  D AA++D            + +      GG  + FPAVF+GG+L GGLDR+MA H++G+LVP+LK+AGALWL
Sbjct:   19 REVRRAVEEKPVVVVGRRGCCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRKDGGDKAAAGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.038e-24
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  138 VTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE-LSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V   A+TAA+ VE++  E+AV+V     CCMCH VK L  G GV+PAV E+        L+  L+R+    G      P VF+GGKL G +DRVMA HI+G LVP+LKEAGALWL
Sbjct:   21 VAAAAETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.158e-22
Identity = 60/116 (51.72%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  144 EEADTAAKSV----EKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            EEA  A  SV     +M   NAV+V    GCCMCHVVK LLLG GV PAV+E+     AA  D  + +      G    P VFVGG+L GG+++VMA HI+G LVP+LK+AGALWL
Sbjct:   79 EEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYEL--DQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 192          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRS13_ARATH (Monothiol glutaredoxin-S13 OS=Arabidopsis thaliana GN=GRXS13 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   93 PAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            P+ ++ + S    G     + +  +S   +++ENAV+V  R GCC+ HV K LLL HGVNP V E+ + D     + +S  D E      + P +++GGKLFGGL+ +MA HI+GDLVP L++AGALWL
Sbjct:   30 PSSSSSSLSWLTSGSPKPTSISNKRSSNLVVMENAVVVFARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNYDNIVS--DKE------KLPMMYIGGKLFGGLENLMAAHINGDLVPTLRQAGALWL 150          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC7_ARATH (Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.792e-21
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  117 SSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVA----DGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            SS   GG+   ADT    +E +  E+AV++     CCMCH VK L  G GV+PAV E+      GD    L  L      +  G +  P VF+GGKL G +DRVMA+HI+G LVP+LK+AGALWL
Sbjct:   14 SSLGFGGLGMVADTGLLRIESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELDLHPYGGDIQRALIRLLGCSGSSSPGSL--PVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGALWL 136          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  153 DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQ----FPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            ++A   VE++  E+AV+V     CCMCH VK L  G GV+P V E+        L+      V  GG         P VF+GGKL G +DRVMA HI+G LVP+LKEAGALWL
Sbjct:   23 ESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 56/140 (40.00%), Postives = 79/140 (56.43%), Query Frame = 3
Query:   72 YRTYIHGPAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE--LSRIDVENGGGIIQ--FPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            Y+T   G +++  N S          ++T AK +E M  ENAV++     CCMCH +K L  G GV+PAV E+        +    L  +   +GG       P VF+GGK+ G ++RVMA+HI+G LVP+LK+AGALWL
Sbjct:    3 YKTETRG-SLSYNNNSKVMNNMNVFPSETLAK-IESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGALWL 140          
The following BLAST results are available for this feature:
BLAST of CN185107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRXC9_ARATH6.344e-3567.96Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 P... [more]
GRXS9_ORYSJ9.809e-2850.70Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. j... [more]
GRXS5_ORYSJ8.304e-2756.67Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. j... [more]
GRXS3_ORYSJ3.489e-2549.15Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. j... [more]
GRXC5_ORYSJ5.038e-2450.43Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC9_ORYSJ6.158e-2251.72Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
GRS13_ARATH1.372e-2142.64Monothiol glutaredoxin-S13 OS=Arabidopsis thaliana... [more]
GRXC7_ARATH1.792e-2146.40Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 P... [more]
GRXC3_ORYSJ4.413e-2046.90Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GRXC8_ARATH9.832e-2040.00Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185107 ID=CN185107; Name=CN185107; organism=Citrus sinensis; type=EST; length=605bp
GAGGCCCACATCTTTCAGAAAAATCAATCTTTGTGCATAAATTAAACAAT
TCCATGCAAGAAGCAATTCCCTATAGAACATATATTCACGGCCCCGCCGT
CGCCGCCGGCAACACGTCATCGGCGCGCGGTGGTGGTGTCACTGAAGAAG
CGGATACCGCTGCAAAAAGTGTGGAAAAGATGCTGGTCGAGAATGCAGTG
TTGGTACTTGGGAGACCCGGGTGTTGCATGTGCCATGTCGTGAAAACGTT
GCTGCTGGGGCACGGTGTGAACCCTGCGGTGTTCGAGGTGGCCGATGGTG
ATGAAGCTGCTGTTCTTGATGAATTGTCGAGAATTGATGTCGAAAACGGT
GGTGGGATTATACAATTTCCGGCCGTTTTTGTCGGAGGGAAGTTGTTTGG
TGGATTGGATCGGGTAATGGCTACACATATTTCCGGCGATTTGGTGCCTA
TTTTGAAAGAGGCCGGGGCTTTGTGGCTATGATCTATCCTCTGCCTCTTC
CTCCATTAATTTTATCTCGATTTCCTTTCTGTCTTTGATGAATGTAGTTA
TGTAGACCATGTAATTCTTCTATGGATCAATATCAAGTTTTCGTGTATTA
ATTAA
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