CN185100

Overview
NameCN185100
Unique NameCN185100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:886..1612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185100 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 60/134 (44.78%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  322 YFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 714
            YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  256 YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of CN185100 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = -3
Query:  343 NSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 708
            NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  255 NSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
BLAST of CN185100 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = -3
Query:  328 YFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 714
            YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  270 YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
The following BLAST results are available for this feature:
BLAST of CN185100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RA212_ARATH9.974e-1844.78Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ9.335e-1642.74Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH1.032e-1443.08Ethylene-responsive transcription factor RAP2-2 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006L23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185100 ID=CN185100; Name=CN185100; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTTTTTTTTTTTGAAGCAAATTAACAAGGATTACAATCATCCGGT
TCAGTTTTTGATCACAAATCACACATAATCATCCATACAGTCACTAGATT
GCAAAATGTTCAAAATGCTTCAAGTCTCATAGGTTAAAAGGAACCTAAAC
ACCTATATACTAAGAATCTACTGAAAGCTCCTGAGAGCAATCTCCACACA
TGGCTTGGCTTAAGCATGTCCAACAATTAAGCACTGCATCTCCAACACAG
ATAGACAACCAGTCCTCAAAGTAACATATAGCCTTATTTACAAAACTAGC
AAGCACATTAAAGTTTGCTCAATACACTCCCCCTAGGGTAGAAGGGAAGT
CATCAAAGCTCCAAAGGTTCATCAAGTTTCCACCATCCTGAGTGTTGTCA
CCATTGAGGAAGGCATCGAGGGAGGCCTCCCAGCTTCCTTCAGGATACGG
CATTGGCAAGAACTTCACCTGATTGTCAAAAGCCAAAAGCTCATCAGACA
GAGACTTTCCATTGTTATCCTGAACAGGCACAGCATTCTCAGAGTTAGAT
TTCAGCTTCTTCATCGGGTTTGCAACCGCATCCACAAACTGAGATTCATC
AACTTCAGGGGTAGCTTCCAAAACAGATGAGATTTCAGGAGTCTTTGGTG
CCTGTTCTCCCCAGCCAAAGTCAGAACAATCAAAGGAGTTACTGCCTTGG
TCAGAGTTGAAATACAAAGGAGTATCATCAG
back to top