CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.498e-67
Identity = 115/184 (62.50%), Postives = 152/184 (82.61%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  ++ +L+W +SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y+VDAADR+ V  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.225e-66
Identity = 113/184 (61.41%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RF++MWERYCRGV+AI+Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.655e-66
Identity = 113/184 (61.41%), Postives = 150/184 (81.52%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAA R+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.655e-66
Identity = 112/184 (60.87%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +  +  +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ R+R+MWERYCRGV+AI+Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI++SK+ +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.079e-66
Identity = 112/184 (60.87%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +   + +L+W R+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.037e-65
Identity = 111/184 (60.33%), Postives = 152/184 (82.61%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +   + +L+W ++LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D + AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
[Close]
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.769e-65
Identity = 111/184 (60.33%), Postives = 151/184 (82.07%), Query Frame = 3 
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +   + +L+W ++LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:    2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARL8B_RAT4.210e-6761.96ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE4.210e-6761.96ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN4.210e-6761.96ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
AR8BA_DANRE5.498e-6762.50ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_BOVIN1.225e-6661.41ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
ARL8B_PONAB4.655e-6661.41ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8B_MACFA4.655e-6660.87ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8A_CHICK6.079e-6660.87ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL8A_MOUSE1.037e-6560.33ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8A_HUMAN1.769e-6560.33ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
back to top