CN185089

Overview
NameCN185089
Unique NameCN185089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185089_ssr49 microsatellite CN185089_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig899 contig Csv1_Contig899:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: SET_HUMAN (Protein SET OS=Homo sapiens GN=SET PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 7.116e-36
Identity = 69/157 (43.95%), Postives = 107/157 (68.15%), Query Frame = 3
Query:  126 ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            A  G   K E+E  E        +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G
Sbjct:   29 ASAGLPKKGEKEQQE--------AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSG 176          

HSP 2 Score: 23.8682 bits (50), Expect = 7.116e-36
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  658 ESFFTWFSD 684
            ESFFTWF+D
Sbjct:  200 ESFFTWFTD 208          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: SET_RAT (Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.208e-35
Identity = 67/154 (43.51%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  147 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G
Sbjct:   23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSG 175          

HSP 2 Score: 23.8682 bits (50), Expect = 1.208e-35
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  658 ESFFTWFSD 684
            ESFFTWF+D
Sbjct:  199 ESFFTWFTD 207          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: SET_MOUSE (Protein SET OS=Mus musculus GN=Set PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.208e-35
Identity = 67/154 (43.51%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  147 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G
Sbjct:   23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSG 175          

HSP 2 Score: 23.8682 bits (50), Expect = 1.208e-35
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  658 ESFFTWFSD 684
            ESFFTWF+D
Sbjct:  199 ESFFTWFTD 207          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: SET_DROME (Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.214e-34
Identity = 65/142 (45.77%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  195 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTF----TFLDDDGSMKI-TATSIKWKEGMGI 605
            ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F        ++G     T+T IKWKEG  +
Sbjct:   32 ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNL 173          

HSP 2 Score: 21.9422 bits (45), Expect = 2.214e-34
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  634 GNKRPLAGE--SFFTWFSD 684
            GNK+    E  +FF WFSD
Sbjct:  183 GNKKKRNSEYKTFFDWFSD 201          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL2_HUMAN (Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.037e-24
Identity = 51/153 (33.33%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  138 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K+ KV+ E+ E+    +   ++ L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G
Sbjct:  196 KQRKVKRESRERNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQ-RNRSGRLVSHSTPIRWHRG 347          

HSP 2 Score: 22.7126 bits (47), Expect = 2.037e-24
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 1
Query:  598 WAYQMELNHEKKGNKRPLAGESFFTWFSD 684
            W    E    + GN+   A  SFF+WFS+
Sbjct:  344 WHRGQEPQARRHGNQD--ASHSFFSWFSN 370          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL2_MACFA (Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.600e-24
Identity = 50/153 (32.68%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  138 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K+ KV+ E+ ++    +   ++ L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G
Sbjct:  196 KQRKVKRESRQRNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRIPILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQ-RNRSGRLVSHSTPIRWHRG 347          

HSP 2 Score: 22.7126 bits (47), Expect = 7.600e-24
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 1
Query:  598 WAYQMELNHEKKGNKRPLAGESFFTWFSD 684
            W    E    + GN+   A  SFF+WFS+
Sbjct:  344 WHRGQEPQARRHGNQD--ASHSFFSWFSN 370          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL2_MOUSE (Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.802e-23
Identity = 49/153 (32.03%), Postives = 94/153 (61.44%), Query Frame = 3
Query:  138 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            +K +  +E+ E+    +   ++ L+ IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ IP FW+ AF++HP +  L+++ D+ IFRYL++L+V+D + +  GY +   F  NPYF +  + K F   +  G +   +T I+W  G
Sbjct:  189 RKQRKAKESRERSAQRMESILQALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPRISILINQRDRDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQ-RNRSGRLVSHSTPIRWHRG 340          

HSP 2 Score: 21.1718 bits (43), Expect = 4.802e-23
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  658 ESFFTWFSD 684
            ESFF WFS+
Sbjct:  355 ESFFNWFSN 363          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: SPR2_CAEEL (Suppressor of presenilin-2 OS=Caenorhabditis elegans GN=spr-2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  204 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEGMGIP 608
            +L  IQ +L+ ++E A+E+VL+VEQ +++ R P+Y+KR  +   I +FW TAF++H  L   + EE + +   L  LEV++F+D++SG+ I   F PN YF +  +TK++    +  S +I  T I+WKE    P
Sbjct:   33 ELDAIQHQLDVMSENAAEEVLKVEQIFNQKRLPIYEKRKKLTTKIDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNEVITKSYHLQSESPSTEI--TEIEWKENKKPP 165          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL6_HUMAN (Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.734e-22
Identity = 48/137 (35.04%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  192 LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEGMG 602
            L +  L+ IQ EL+ +N EA   +L+VE+++ +I +   ++RNDII++IP FW+TAF  HP L  ++  +D ++  YL++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G G
Sbjct:  200 LHLNPLESIQLELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHHPQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVYE-VRSFGQVVSFSTLIMWRRGHG 335          

HSP 2 Score: 23.0978 bits (48), Expect = 6.734e-22
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  661 SFFTWFSD 684
            SFFTWFSD
Sbjct:  349 SFFTWFSD 356          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL4_HUMAN (Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.760e-22
Identity = 55/166 (33.13%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  105 ATKSKMVADKGKKTK--VEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            A + K V  K KK    V+EE   +   ++   ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP L  ++S +D+ + RY+ +LEVE+ K  ++G    F F  NPYF +  L K +      G +   +T I+W  G
Sbjct:  172 AMEEKKVVQKEKKVAGGVKEETRPRAP-KINNCMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYE-RRSSGRVVSLSTPIRWHRG 335          

HSP 2 Score: 25.0238 bits (53), Expect = 8.760e-22
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  607 QMELNHEKKGNKRPLAGESFFTWFSD 684
            Q  ++  ++GN  P    SFF WFSD
Sbjct:  339 QAHIHRNREGNTIP----SFFNWFSD 360          
The following BLAST results are available for this feature:
BLAST of CN185089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SET_HUMAN7.116e-3643.95Protein SET OS=Homo sapiens GN=SET PE=1 SV=3[more]
SET_RAT1.208e-3543.51Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2[more]
SET_MOUSE1.208e-3543.51Protein SET OS=Mus musculus GN=Set PE=1 SV=1[more]
SET_DROME2.214e-3445.77Protein SET OS=Drosophila melanogaster GN=Set PE=1... [more]
TSYL2_HUMAN2.037e-2433.33Testis-specific Y-encoded-like protein 2 OS=Homo s... [more]
TSYL2_MACFA7.600e-2432.68Testis-specific Y-encoded-like protein 2 OS=Macaca... [more]
TSYL2_MOUSE4.802e-2332.03Testis-specific Y-encoded-like protein 2 OS=Mus mu... [more]
SPR2_CAEEL1.586e-2237.78Suppressor of presenilin-2 OS=Caenorhabditis elega... [more]
TSYL6_HUMAN6.734e-2235.04Testis-specific Y-encoded-like protein 6 OS=Homo s... [more]
TSYL4_HUMAN8.760e-2233.13Testis-specific Y-encoded-like protein 4 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185089 ID=CN185089; Name=CN185089; organism=Citrus sinensis; type=EST; length=690bp
CTGCAGGAATTCTGGCACGAGGAAGCCACTGGGGTTTTAGGCACTCGTCG
AGCGAGCGAGTTAGGGCTATTTAATTTTTATTTTATTTGTTTGTTATTTT
AATAGCTACCAAGAGCAAAATGGTGGCAGACAAGGGCAAAAAAACCAAAG
TTGAAGAAGAAAACGCAGAGCAAATTGACTCAGAACTTGTTCTTTCCATC
GAGAAACTCCAAGAGATCCAAGACGAGCTTGAAAAGATTAACGAAGAGGC
AAGCGAGAAAGTCTTGGAGGTTGAGCAGAAATACAGTGAGATACGCAAGC
CAGTCTATGATAAGCGAAATGATATCATCAAATCCATACCTGACTTCTGG
CTAACTGCCTTTATTAGTCATCCTGCTCTCGGTGAACTTTTGAGTGAAGA
GGATCAGAAGATATTCAGGTACTTGAGCTCTCTGGAAGTGGAGGATTTTA
AAGATGTCAAATCAGGATACTCCATCACATTTAACTTCTCCCCCAATCCC
TATTTTGAGGATACCAAACTTACCAAGACTTTCACCTTCCTTGATGATGA
TGGTTCAATGAAAATTACTGCTACATCAATCAAATGGAAAGAGGGCATGG
GCATACCAAATGGAGTTAAATCATGAGAAGAAAGGAAACAAGCGGCCATT
GGCGGGAGAAAGCTTCTTTACCTGGTTCAGTGATACCCAA
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