CN185083

Overview
NameCN185083
Unique NameCN185083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4485 contig Csv1_Contig4485:60..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ARATH (Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 121/173 (69.94%), Postives = 134/173 (77.46%), Query Frame = -2
Query:  273 EALKTWRL*GVQE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDIS 791
            E L+  R  GV+    PLLCKEF+VD WQIYYARTKGADAVLLIAAVL DL+I ++ KICK L L ALVEVHDEREM RV                ETFEVDISNTKKLLEGE G  IR++++IVVGESGLFTPDDIAYVQ AGVKAVLVGESIVKQ+DP KGI GLFG++IS
Sbjct:  231 ENLEAIRSAGVK---CPLLCKEFVVDPWQIYYARTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNIS 400          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_MICAN (Indole-3-glycerol phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=trpC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.442e-42
Identity = 87/154 (56.49%), Postives = 105/154 (68.18%), Query Frame = -2
Query:  288 SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 749
            S PLLCKEFI+  +QIYYAR+KGADAVLLIAA+L D D+ Y  KI K LG+TALVEVH   E DRV                ETF VD+ NT++LLE  RGE +R+K I++V ESGL T  D+A V++AG  AVL+GES+VK  DP  GI  LF
Sbjct:  140 SLPLLCKEFILYPYQIYYARSKGADAVLLIAAILSDQDLAYFVKIVKGLGMTALVEVHSLAEFDRVLAIEGIELIGINNRNLETFTVDLDNTRQLLEA-RGEQVREKGILIVSESGLHTATDLAKVKQAGANAVLIGESLVKLPDPALGIQKLF 292          

HSP 2 Score: 33.8834 bits (76), Expect = 8.442e-42
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD K+F+GS+ENL  VR A
Sbjct:  117 SVLTDSKFFQGSYENLTLVRQA 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP8 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.850e-39
Identity = 81/153 (52.94%), Postives = 101/153 (66.01%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCKEFI+  +QIY ARTKGADAVLLIAA+L D D+ Y  KI + LG+TAL+EVH   E+DRV                ETFEVD+  T +LL   R + I+   I ++ ESGL TPDD+ +VQ+AG   VL+GES+VKQ DP + I  LFG
Sbjct:  142 PLLCKEFILYPYQIYLARTKGADAVLLIAAILSDRDLSYFLKIIQTLGMTALIEVHSLTELDRVLAIEGVSLIGINNRNLETFEVDLKTTSQLLAARRDK-IQALGIKIISESGLHTPDDLQFVQQAGSDGVLIGESLVKQPDPTQAIANLFG 293          

HSP 2 Score: 33.4982 bits (75), Expect = 2.850e-39
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD K+F+GSFENL  VR +
Sbjct:  117 SVLTDAKFFQGSFENLALVRQS 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNY3 (Indole-3-glycerol phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=trpC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.815e-38
Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = -2
Query:  282 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 743
            PLLCKEFI+  +QIY AR++GADAVLLIAA+L D D+RY  KI + LG+ ALVEVH   EMDRV                +TF VD+  T+ L   +R E + Q +I +V ESG++   D+  +Q+AG +AVLVGES+VKQ DP + I  L+G+
Sbjct:  142 PLLCKEFIIYPYQIYLARSRGADAVLLIAAILSDKDLRYFLKIIEGLGMAALVEVHTLEEMDRVLALDGVQLIGVNNRNLQTFTVDLQTTEDLF-AQRREQLTQGDITLVSESGIYELADLQRLQQAGARAVLVGESLVKQPDPQQAIAALYGE 294          

HSP 2 Score: 39.6614 bits (91), Expect = 6.815e-38
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTDEK+F+GSFENL+ VRSA
Sbjct:  117 SVLTDEKFFQGSFENLQLVRSA 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_CYAA5 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=trpC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.654e-37
Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  288 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 743
            PLLCKEFI+  +QIY AR KGADA+LLIAA+L D D++Y+ KI   LG+T LVEVH   E+DRV                ETFEV +  T  L+   + E I+++ I +V ESG+ TP  +  V EAG  AVL+GES+VKQDDP + I  LF
Sbjct:  142 PLLCKEFIIYPYQIYLARVKGADAILLIAAILKDSDLQYLIKIIHGLGMTPLVEVHSLAELDRVLAIEGVSLVGINNRNLETFEVSLETTTNLITARQDE-IKERGIYIVSESGIHTPQHLQQVTEAGANAVLIGESLVKQDDPTQAIANLF 292          

HSP 2 Score: 33.8834 bits (76), Expect = 5.654e-37
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD K+F+GSF+NL  VR A
Sbjct:  117 SVLTDSKFFQGSFDNLALVRQA 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_TRIEI (Indole-3-glycerol phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=trpC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.219e-34
Identity = 73/157 (46.50%), Postives = 102/157 (64.97%), Query Frame = -2
Query:  273 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDIS 743
            PLLCK+F++  +QIY+AR  GADAVLLIAA+L D D++Y  KI   LG+TALVEVH  +E+DRV                E F VD+  T +L+E  + E + +  I+VV ESG+ + +DI ++  AGV AVLVGES+VK+ +PG  +  LF ++ S
Sbjct:  142 PLLCKDFLIYPYQIYFARLYGADAVLLIAAILSDQDLKYFIKIVNSLGMTALVEVHTLKELDRVLGIEGVKLIGINNRNLEDFSVDLQTTFQLMEARKKE-LEKLGILVVSESGIHSYEDINFMINAGVNAVLVGESLVKKTNPGTALLQLFNENKS 297          

HSP 2 Score: 32.7278 bits (73), Expect = 3.219e-34
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD K+F+GSFENL  +R
Sbjct:  117 SVLTDRKFFQGSFENLANIR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNP6 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.666e-33
Identity = 71/153 (46.41%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCK+F++  +QIY AR  GADAVLLIAA+L D D+RY  KI   LGL ALVEVH   E++RV                +TF  D++ T+ L         R +++++V ESGLFT  D+  V +AG +AVL+GES+VKQ DPG  +  L G
Sbjct:  143 PLLCKDFVIYPYQIYKARLLGADAVLLIAAILSDADLRYFLKIAHSLGLNALVEVHSLPELERVLALDDLRLVGINNRNLKTFVTDLAVTEHL-----AAQCRDRDLLLVSESGLFTGADLDRVTQAGAQAVLIGESLVKQPDPGLALQQLVG 290          

HSP 2 Score: 36.965 bits (84), Expect = 2.666e-33
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTDEK+F+G FENL+ VR+A
Sbjct:  118 SVLTDEKFFQGGFENLQRVRAA 139          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNE7 (Indole-3-glycerol phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=trpC PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 2.666e-33
Identity = 71/153 (46.41%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCK+F++  +QIY AR  GADAVLLIAA+L D D+RY  KI   LGL ALVEVH   E++RV                +TF  D++ T+ L         R +++++V ESGLFT  D+  V +AG +AVL+GES+VKQ DPG  +  L G
Sbjct:  143 PLLCKDFVIYPYQIYKARLLGADAVLLIAAILSDADLRYFLKIAHSLGLNALVEVHSLPELERVLALDDLRLVGINNRNLKTFVTDLAVTEHL-----AAQCRDRDLLLVSESGLFTGADLDRVTQAGAQAVLIGESLVKQPDPGLALQQLVG 290          

HSP 2 Score: 36.965 bits (84), Expect = 2.666e-33
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTDEK+F+G FENL+ VR+A
Sbjct:  118 SVLTDEKFFQGGFENLQRVRAA 139          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_GLOVI (Indole-3-glycerol phosphate synthase OS=Gloeobacter violaceus GN=trpC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.522e-33
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  300 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 743
            PLLCKEFI+  +QIY AR  GADAVLLIAA+L D D+ Y+ ++   LG+ ALVEVHD  E+DRV                  FEV +  T+ LL  ERGE + +  I VV ESG++   D+A V++AG +AVLVGES++++ DP + +
Sbjct:  142 PLLCKEFILGPYQIYLARAHGADAVLLIAAILSDTDLAYLMRVADQLGMAALVEVHDLEELDRVLALEGVALVGINNRNLLDFEVHLETTETLLT-ERGERLAEWGITVVSESGIYQGADLARVRKAGARAVLVGESLLREADPAQAV 288          

HSP 2 Score: 30.8018 bits (68), Expect = 4.522e-33
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTDE +F+GSF NL  +R
Sbjct:  117 SVLTDEAFFQGSFTNLSRIR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACAM1 (Indole-3-glycerol phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=trpC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.872e-32
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  321 SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 749
            S PLLCKEF++  +QIY AR++GADAVLLIAA+L D D+ Y  KI K LG+TALVEVH   E++RV                ETF VD+  T +LL  ++G  ++ ++I+VV ESGL T  D+A V++AG  AVL+GES+VK+
Sbjct:  140 SLPLLCKEFVIYPYQIYLARSRGADAVLLIAAILSDQDLTYFLKIIKSLGMTALVEVHTLPELERVMDIPGIELIGINNRDLETFTVDLEVTCQLL-AQQGTSLQDQDILVVSESGLHTSADLAQVKQAGAGAVLIGESLVKE 281          

HSP 2 Score: 30.0314 bits (66), Expect = 2.872e-32
Identity = 11/22 (50.00%), Postives = 19/22 (86.36%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD ++F+GSF+ L+ +R+A
Sbjct:  117 SVLTDAEFFQGSFDYLQQIRAA 138          
The following BLAST results are available for this feature:
BLAST of CN185083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
TRPC_ARATH1.570e-5769.94Indole-3-glycerol phosphate synthase, chloroplasti... [more]
TRPC_MICAN8.442e-4256.49Indole-3-glycerol phosphate synthase OS=Microcysti... [more]
TRPC_CYAP82.850e-3952.94Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNY36.815e-3849.35Indole-3-glycerol phosphate synthase OS=Synechocys... [more]
TRPC_CYAA55.654e-3750.00Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_TRIEI3.219e-3446.50Indole-3-glycerol phosphate synthase OS=Trichodesm... [more]
TRPC_SYNP62.666e-3346.41Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNE72.666e-3346.41Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_GLOVI4.522e-3347.30Indole-3-glycerol phosphate synthase OS=Gloeobacte... [more]
TRPC_ACAM12.872e-3250.35Indole-3-glycerol phosphate synthase OS=Acaryochlo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185083 ID=CN185083; Name=CN185083; organism=Citrus sinensis; type=EST; length=822bp
GAGGTTTTTTTTTAGCAGGTAAAATGCAGAGACCACAGTTCTCTTTTATT
ATTCTCAATCCATACAACAATACCATTACTATCAGATACAATACATTATT
CCAGTTCACTAGTGAAAGTTACAAAATTCAAAAGGAAAAGGAAATAAGGC
TATAGAATACAATAAGGGGGACGGTATATTTAATTGATCGATCAAAAGGT
GACTTTATTCATCTTCCATCTGAATAACATTCACCCGAACATTCTGAGAA
ACAATAAAATAGGAGCTCATACAGAAATGTCTTTTCCAAAAAGTCCAGTT
ATTCCCTTCCCGGGGTCGTCTTGCTTCACTATTGACTCCCCAACCAGAAC
AGCTTTAACACCAGCTTCTTGTACGTATGCGATATCATCGGGAGTAAATA
GCCCAGATTCACCAACCACAATTATGTTCTTTTGACGGATTATTTCACCA
CGCTCTCCTTCAAGAAGTTTCTTTGTGTTACTAATATCAACCTCAAACGT
CTCAAGGTTCCGATTGTTAATACCAATAAGTTCAATCCCCTCAATTCCAA
GAACACGATCCATTTCCCTCTCGTCATGAACCTCAACAAGTGCAGTCAAA
CCAAGCATCTTGCAGATCTTAGTCATGTATCTGATATCAAGATCAGGCAA
AACAGCAGCGATCAGAAGAACTGCATCTGCACCTTTAGTTCGGGCATAGT
AGATCTGCCATGCGTCTACAATGAATTCTTTGCACAATAGGGGGGCACTT
CACTCCTGCACTCCTTACAGCCTCCAAGTTTTCAAAGCTTCCCTTAAAAT
ACTTTTCATCTGTCAAAATACT
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