CN185079

Overview
NameCN185079
Unique NameCN185079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.080e-63
Identity = 125/154 (81.17%), Postives = 138/154 (89.61%), Query Frame = 1
Query:   82 HESG-EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLA---HQGSFPQGVNYGNSQGS 528
            HESG +QSPRS NVREQDR+LPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK+YL RYREMEGDTKG+ KGG++SAK+DGQP+  +Q +    QGSF QG  YGNSQGS
Sbjct:   14 HESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYGNSQGS 166          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.842e-61
Identity = 122/152 (80.26%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   82 HESG-EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN---TQLAHQGSFPQGVNYGNSQ 522
            HESG +QSPRS +VREQDR+LPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK+YL RYREMEGDTKG+AKGGD +AKKDGQ + N   +QLAHQG       YGNSQ
Sbjct:   15 HESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP------YGNSQ 160          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.197e-54
Identity = 115/172 (66.86%), Postives = 129/172 (75.00%), Query Frame = 1
Query:   82 HESGEQSPRS-----NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQ------LAHQGSFPQGVNYGNSQGSIYNYQLGDFSSI 564
            HESG  SPR      +VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK+YL +YREMEGD+K  AK  D S KKD   +          +  QG++ QG+ Y   Q     Y  GD S++
Sbjct:   15 HESG--SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ-----YHNGDISNV 179          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.941e-54
Identity = 116/178 (65.17%), Postives = 128/178 (71.91%), Query Frame = 1
Query:   82 HESGEQSPRSN------------VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKD------GQPNPNTQLAHQGSFPQGVNYGNSQGSIYNYQLGDFSS 561
            HESG  SPR              VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK+YL +YREMEGD+K  AK GD S KKD      G  +    +  Q ++ QG+ Y   Q     Y  GD S+
Sbjct:   15 HESG--SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQ-----YHNGDVSN 185          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 6.797e-50
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = 1
Query:  112 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDG 450
            +VREQDRYLPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLKIYL RYRE+EGD KG+ K GD S +  G
Sbjct:   18 SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAG 130          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.754e-49
Identity = 101/154 (65.58%), Postives = 121/154 (78.57%), Query Frame = 1
Query:   82 HESGEQSPRSN-VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKD------GQPNPNTQLAHQGSFPQGVNYGNSQ 522
            H+     PRS  VREQDR+LPIANISRIMKKA+PANGKIAKDAKET+QECVSEFISF+TSEASDKCQ+EKRKTING+DLL+AM TLGFE+Y+DPLKIYL +YRE+ GD+K ++K GD S KKD      G  + + Q    G++ QG+ Y   Q
Sbjct:   20 HDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSVKKDTIGPHSGASSSSAQ-GMVGAYTQGMGYMQPQ 172          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.041e-45
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME----------GDTKGNAKGGDASAKKDGQP 456
            ++ REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFEDY++PLK+YL +YRE+E          GD +G   GG A +   G P
Sbjct:   17 ASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAGSGSGGAP 142          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.162e-43
Identity = 80/98 (81.63%), Postives = 92/98 (93.88%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKG 411
            REQDR+LPIAN+SRIMKKALPAN KI+KDAKET+QECVSEFISF+T EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK+YL R+RE+EG+  G
Sbjct:   26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG 123          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.342e-42
Identity = 81/110 (73.64%), Postives = 97/110 (88.18%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKD 447
            +EQDR+LPIANI RIM++A+P NGKIAKD+KE+VQECVSEFISFITSEASDKC +EKRKTINGDDL+W+M TLGFEDY++PLK+YL  YRE EGDTKG ++  +   KKD
Sbjct:   21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKG-SRASELPVKKD 129          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.768e-41
Identity = 76/104 (73.08%), Postives = 91/104 (87.50%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAK 420
            +N +EQDR+LPIAN+ RIMKK LP NGKI+KDAKETVQECVSEFISF+T EASDKCQREKRKTINGDD++WA+ TLGFEDY+ PLK+YL +YR+ EG+   + K
Sbjct:   32 NNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK 135          
The following BLAST results are available for this feature:
BLAST of CN185079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYBA_ARATH1.080e-6381.17Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH3.842e-6180.26Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB_MAIZE1.197e-5466.86Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ5.941e-5465.17Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB1_ARATH6.797e-5083.19Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ5.754e-4965.58Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB3_ARATH5.041e-4570.63Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB2_ARATH6.162e-4381.63Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB4_ORYSJ2.342e-4273.64Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]
NFYB7_ARATH5.768e-4173.08Nuclear transcription factor Y subunit B-7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185079 ID=CN185079; Name=CN185079; organism=Citrus sinensis; type=EST; length=801bp
GAGGCTCAACACCTCATCAGCTAGGGTTTTCTTTCATTTGAGATGGCGGC
CGAGGCACCGGCGAGTCCAGGAGGCGGCAGCCACGAGAGCGGCGAGCAGA
GTCCGAGATCCAACGTCCGCGAACAAGACAGGTACCTTCCGATCGCTAAT
ATTAGCCGGATCATGAAGAAGGCGCTCCCTGCTAACGGAAAAATCGCTAA
GGACGCTAAAGAGACTGTCCAGGAGTGCGTTTCTGAGTTCATCAGCTTTA
TCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGAAAGACGATT
AACGGTGATGATTTGCTTTGGGCTATGGCAACGTTAGGCTTTGAGGATTA
TATTGATCCGCTGAAAATTTACCTAACCAGATACAGAGAGATGGAGGGTG
ACACCAAGGGTAATGCAAAAGGTGGAGATGCATCTGCTAAGAAAGATGGT
CAACCAAACCCAAACACTCAGCTTGCTCATCAAGGCTCCTTCCCGCAAGG
TGTTAACTATGGGAATTCTCAAGGAAGCATATACAATTACCAACTAGGGG
ATTTCAGTAGCATATGATACAGATACTTCTTGACATGTTATGAAGAACTA
CTGACCAGTCATGATCAATACTGTTCAGTTTGCTGTTACAGAAAAGCATC
AGTCCTGTTTGTCTGGGATTTGATGAAAAAAATTGTTTATTTCCGACTTT
ATGTTAGTTTGTTAATGTTATTTGTTTTTGCATTAAAGTAACATTGTATA
GCGGATATTCAGCTATTGCTAGTTATAAAGATGCTCTTCAACTATTAATC
T
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