CN185066

Overview
NameCN185066
Unique NameCN185066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2479 contig Csv1_Contig2479:409..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185066 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = -1 
Query:  223 HALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 315
            HALKFSQMFHLMPTPQGSFYV NDIFRLNYA
Sbjct:   96 HALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 126
The following BLAST results are available for this feature:
BLAST of CN185066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NTF2_ARATH2.538e-1196.77Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185066 ID=CN185066; Name=CN185066; organism=Citrus sinensis; type=EST; length=315bp
TTCACTAAGACCCAACTTCTTCAGGGAGATCTTGCAGTTACTCAACCAAT
CACAGAAAAGATGTCTCTATTTAAAGTTCAGGAAAGGCACAAGGGAACCT
TAAACATAACCGACCACAGAAAAACCCAGTGTTCATTTAAATGTTTAAAA
TCCAATAAAGATAAAGGAAACATGTTTCACTCCTTCAGGAGTTGCATCCC
TTTTCAATCAATCTTCTCTTCATGCATAGTTCAACCTGAATATGTCATTC
AACACATAAAAGCTTCCCTGAGGTGTTGGCATCAAATGGAACATCTGGCT
GAACTTGAGAGCGTG
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