CN185065

Overview
NameCN185065
Unique NameCN185065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9064 contig Csv1_Contig9064:103..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185065 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 70/118 (59.32%), Postives = 101/118 (85.59%), Query Frame = -2
Query:  514 KPNPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATK 867
            KP PDPSV  +I+E RR +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD+AS+LGM FP +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA +
Sbjct:  590 KPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKR 707          
BLAST of CN185065 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.559e-34
Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = -2
Query:  511 KPNPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 867
            K  P+P +   IE+ R  S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD+A V+GM FPSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G
Sbjct:  593 KAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQG 711          
BLAST of CN185065 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.559e-34
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = -2
Query:  511 KPNPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 867
            K  PDP +   I++ R +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD+A + GM FP YRGGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG
Sbjct:  593 KAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYRGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKG 711          
The following BLAST results are available for this feature:
BLAST of CN185065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MFP_ORYSJ1.008e-4159.32Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA1.559e-3455.46Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA1.559e-3453.78Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185065 ID=CN185065; Name=CN185065; organism=Citrus sinensis; type=EST; length=868bp
GAGGAAACAACTGATTACAAACAAGAAATTACAACTTATGGGCATTCCTC
CATCCAGACCACCAATTCAGCAGTGCAAATAGCTAATTTTTAACTTCCAA
TGCTGGTGGAGCCCGGCTTGTCAACTACTAGAACATAAACTATTTAGTAA
CGATAGCCATACAAAATTTATTTGCAAGTGGTGAATTTATAAAGTTATTA
TTACAATTCAATTCAATGCTGAACTAGACAGTACTAAATACTAATCCAGT
TCAATCCTAATCTGATTCAATTCAATCCGACACCAAATCGTATCCTAAGC
ACTCCGGGTGAATAAAAGACATCTGGATTCGATGACAGAAAGAATGCAAT
GCATTTTACTTATTTTTATTCCTTCCACGACTTTCCCTGGTCTAACTAGG
AAGCGTATCTTCATCAACTTTATTGAATCAAAGCATATATAATATATAAT
TATTGCCTAGAGGCGCGCCCTTGATGTTGAAGAAGATGACACCGGTGCAC
TCAACGGAATGCCTTTTGTTGCTCTTTCTTCCAAGAACCTAGATGGTTTG
AAAAAGTTACCATACAGTTGTGACCATTTCTTTAGACTTGTATACACATA
GTTTGCCCCAACTGCGTCGGCCCAAAAGACGATGCCACCACGGTAAGATG
GGAAACTCATTCCAAGAACTGATGCAACGTCAAGGTCTGAGGCTCGAACT
ACTATTCCTTCTTCCAAAACACGACATGATTCATTCACCACTGGAAAGAG
TATCATCTCCACAATTTCTTTTTCAGTGACAGATATAGGCTTTCCCCCAG
GCATAATATTGCTTAGTCGTCTACATTCCTCAATAATTGGTAACACAGAA
GGATCTGGGTTTGGCTTG
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