CN185060

Overview
NameCN185060
Unique NameCN185060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185060_ssr412 microsatellite CN185060_ssr412:412..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN185060 vs. ExPASy Swiss-Prot
Match: CYPR4_CYNCA (Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 2
Query:  518 MFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKPEVADDSMWEDADDGLG*TPESVTPVRGNRDL 805
            MFGDQRR+DFVD GVWALKF  D +YR+FVT FQ  LFENVYGLKA++ENK+KVYGK+FIGWVKP+VADDSMWE  DD L  +P  +TPVRG+ DL
Sbjct:    1 MFGDQRRVDFVDSGVWALKFMRDEDYREFVTRFQSCLFENVYGLKASDENKVKVYGKDFIGWVKPDVADDSMWEKDDDELWRSPSKMTPVRGSNDL 96          
The following BLAST results are available for this feature:
BLAST of CN185060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CYPR4_CYNCA8.675e-3772.92Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185060 ID=CN185060; Name=CN185060; organism=Citrus sinensis; type=EST; length=806bp
GAGGCAAAACTCGATTCTCTCTCAATCATTCGATTACCCGAATAGAATTT
CTGAAATTCCTTGTTAAGCTTGAATAATGGGCACGTCTCAAAGCCGCGAA
GATTACATCTCAGACTCCGATTATGAAGAATCAGAATCAGGAGAATCTTC
CCAATACGACGACGCTCAGGAAACAAGTTCTTCTTCATCACAATCAGGTA
CCAAAACCCTAAATTCTCTGGACGAAGTAGACGCCAAGCTCAAATCGCTT
AAACTCAAATACGCAACTCCCCAAAGCCCTAATGTTAAAAACCCAGTTAA
GCTCTACCTCCACATCGGGGGCAACACACCAAAAGCTAAGTGGGTTATTT
CTGATAAGTTAACATCTTATAGTTTTGTAAGAACAAATAAAATCAACGGT
GGAAATGACTCTGATGATGATGAGGAAGAGAGTGAAGGGGTTCTTGGTGA
TGGGTTTTGGGTTTTGAAAGTTGGGTCTAAAGTTAGGGCTAAGGTTTCCA
CCGAAATGCAGTTAAAAATGTTTGGAGATCAGAGGAGAATTGATTTCGTT
GATAAGGGTGTTTGGGCGTTGAAATTTTTTAGTGATTCTGAGTATAGAAA
GTTTGTGACTGAGTTTCAAGATCGCTTATTTGAGAATGTGTATGGGCTAA
AAGCTACTGAAGAGAATAAAATGAAAGTTTATGGGAAGGAGTTTATCGGA
TGGGTTAAGCCCGAGGTGGCCGATGATTCTATGTGGGAGGATGCAGATGA
TGGTTTGGGATAAACCCCTGAAAGTGTGACACCTGTTAGGGGAAATCGAG
ATTTGT
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