CN185056

Overview
NameCN185056
Unique NameCN185056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185056_ssr18 microsatellite CN185056_ssr18:18..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:26..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185056 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.660e-28
Identity = 91/247 (36.84%), Postives = 105/247 (42.51%), Query Frame = 1
Query:  145 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFVSGDDEVESPLPAKKPRL 795
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE               D+EV+SPL  KKPRL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258          
The following BLAST results are available for this feature:
BLAST of CN185056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.660e-2836.84Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185056 ID=CN185056; Name=CN185056; organism=Citrus sinensis; type=EST; length=864bp
GAGGATCTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTCAC
ACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGCACTGGAAG
CTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCGAAGAAGCT
AATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCC
ACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGC
TTGCACGTGGCACAACCTCCACCGCCGTCTTAACTAACTGCAACACGACC
ACCGCCGCCTCACAGCGACAGAAGTCTCCTGCTCTATCTACTGCTGCAAC
GACGTCGTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGCGTGTGCGACA
AGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGT
AAGGGATCTGGGGGCGGCGATGAACACTCCGCATCCACTACCACCAACAC
CAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGGTAGGACCC
ACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAGCCTTGGGC
GGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTC
ATCCGGATCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGACTTTGACC
TCAACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCGTCTCCGGT
GATGACGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCCCGTCTTTTCTT
GCCCCCCAAAATCGAAGTTTAATTTACTTAATTGCCACTTTTTTTTTTTG
TTTTTGGGCTACTT
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