CN185039

Overview
NameCN185039
Unique NameCN185039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4326 contig Csv1_Contig4326:264..478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185039 vs. ExPASy Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.655e-16
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   35 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 214
            +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RDA+DPL TTD+
Sbjct:    8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67          
BLAST of CN185039 vs. ExPASy Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 2
Query:   23 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTD 211
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTE 66          
BLAST of CN185039 vs. ExPASy Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.357e-14
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 2
Query:   23 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTD 211
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66          
BLAST of CN185039 vs. ExPASy Swiss-Prot
Match: LSM7_YEAST (U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae GN=LSM7 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.706e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   35 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 205
            ++E +LDLAK+ D  ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD   T
Sbjct:   23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNT 79          
BLAST of CN185039 vs. ExPASy Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe GN=lsm7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.758e-12
Identity = 30/53 (56.60%), Postives = 43/53 (81.13%), Query Frame = 2
Query:   35 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD 193
            RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D
Sbjct:   21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPED 73          
The following BLAST results are available for this feature:
BLAST of CN185039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM7_DICDI7.655e-1661.67Probable U6 snRNA-associated Sm-like protein LSm7 ... [more]
LSM7_HUMAN5.486e-1452.38U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
LSM7_MOUSE9.357e-1452.38U6 snRNA-associated Sm-like protein LSm7 OS=Mus mu... [more]
LSM7_YEAST6.706e-1254.39U6 snRNA-associated Sm-like protein LSm7 OS=Saccha... [more]
LSM7_SCHPO8.758e-1256.60U6 snRNA-associated Sm-like protein LSm7 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185039 ID=CN185039; Name=CN185039; organism=Citrus sinensis; type=EST; length=215bp
ATTTAGGGTTCTTGAAATCCTCAAGATGTCAGGAAGAAAAGAAACAGTTC
TGGATTTGGCAAAGTTTGTAGACAAAGGTGTTCAAGTGAAGCTCACTGGT
GGTAGACAAGTGACCGGGACTCTAAAAGGGTATGATCAGTTGCTAAATCT
TGTCCTGGATGAAGCTGTAGAGTTTCTAAGAGATGCTGATGATCCATTGA
AGACTACTGATCAGA
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