FC921910

Overview
NameFC921910
Unique NameFC921910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921910 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.130e-17
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = -1 
Query:   62 YKEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKF 241
            YKE R++SR  AVE LYQDMAARHR+RF SIHILKV EIE    ++R Y+KQ L KDLKF
Sbjct:   91 YKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKF 150
[Close]
BLAST of FC921910 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.883e-16
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = -1 
Query:   62 YKEFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKF 241
            YKEFR+ +R  AVEA+Y DMAARHR+RF SI ILKVVE+E  + +RR Y+KQLL   LKF
Sbjct:   90 YKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKF 149
The following BLAST results are available for this feature:
BLAST of FC921910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL20_YEAST7.130e-1768.3360S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL20_SCHPO7.883e-1665.0060S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionC06053G12T7 RindPdigS Citrus sinensis cDNA clone C06053G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921910 ID=FC921910; Name=FC921910; organism=Citrus sinensis; type=EST; length=256bp
GAGCGGTGAGAGTAGGCGAAGACCTTCTTGCCGACCTTGCCACCCGTAAG
AGGGGCAGAGGGAACTTGAGGTCCTTCTGGAGGAGCTGCTTGATGTAGGG
GCGGCGGATGCTGTCGTTGTTCTCGATCTCAACAACCTTGAGGATGTGGA
TGGAACCGAAACGGGAGCGGTGACGGGCAGCCATGTCCTGGTAGAGAGCC
TCAACAGCGTCGGTGCGGCTCATCTCACGGAACTCCTTGTACCTCGGCCG
CGACCA
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