CN185037

Overview
NameCN185037
Unique NameCN185037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:29..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.038e-50
Identity = 90/104 (86.54%), Postives = 98/104 (94.23%), Query Frame = 1
Query:  121 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            DRIKGPWSPEEDE L++LV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+ EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRK
Sbjct:    3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RKV
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RKV
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RKV
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RKV
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RKV
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RKV
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.153e-33
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T  ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RKV
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.966e-33
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            +KGPW+ EED+ + +LV K+GP+ WS+I+K + GR GK CR RW N L+P V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST+KRKV
Sbjct:   85 VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKV 187          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.568e-33
Identity = 61/105 (58.10%), Postives = 83/105 (79.05%), Query Frame = 1
Query:  121 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            D +KGPW+ EEDE + +LV+K+G ++W+LI+K + GR GK CR RW N L+P+V+  ++T EED +I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRKV
Sbjct:   80 DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
The following BLAST results are available for this feature:
BLAST of CN185037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB44_ARATH1.038e-5086.54Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_MOUSE1.778e-3461.17Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN1.778e-3461.17Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK1.778e-3461.17Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN1.778e-3461.17Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE2.322e-3461.17Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN2.322e-3461.17Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_CHICK1.153e-3360.19Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYBA_XENLA1.966e-3359.22Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBB_XENLA2.568e-3358.10Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185037 ID=CN185037; Name=CN185037; organism=Citrus sinensis; type=EST; length=472bp
GAGGAAAGACCCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATG
ATCAACACCCACTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGG
CGTTTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAA
GAAGACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTG
GTCTCTAATCAGCAAATCAATCCCCGGAAGATCGGGAAAGTCTTGCCGGC
TACGGTGGTGCAACCAGCTTTCACCTCAAGTCGAGCACCGAGCGTTCACG
CCCGAAGAAGACGAGATGATCATACGCGCCCACGCTCGGTTTGGCAACAA
GTGGGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTA
AGAATCACTGGAACTCGACCTTAAAACGTAAGGTGTTCTTCGATGTTGAC
AGAGAACGGTATTTTTTTGAAT
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