CN185034

Overview
NameCN185034
Unique NameCN185034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185034 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.866e-49
Identity = 100/186 (53.76%), Postives = 126/186 (67.74%), Query Frame = 1
Query:  172 ILLTVFLAVISGVSACSPSDXXXXXXXXXXXNEPYLGIFASWTGD-NCCTNWYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSLASLRVLDLVGNKISGKIPDAIGNLQKLTVLKFSRQCRLWGNPHLSLVRLSSFKSIWNLSNNPT 726
            +L  VF++VIS V  CSP D           +EP LGIF +W+ + +CC  WYG+SCDP + RVTDISLRGESED I  KAGRSGYM+GSI+PA+C L  L++LV+ADWKGI+G++P CITSLASLR+LDL GNKI+G+IP  IG L KL VL  +   ++ G    SL  L   K +    N  T
Sbjct:   12 LLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAEN-QMSGEIPASLTSLIELKHLELTENGIT 196          
BLAST of CN185034 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 52/179 (29.05%), Postives = 85/179 (47.49%), Query Frame = 1
Query:  139 ISHANVMALPLILLTVFLAVISGVSACSPSDXXXXXXXXXXXNEPYLGIFASWTGDNCCTNWYGVSCDPTTRRVTDISL-RGESEDPILVKAGRSGY-----------MTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSLASLRVLDLVGNKISGKIPDAIGNLQKLTVLKFSR 639
            +  +  ++L L+  +V    +S +  C+P D            +PY  + ASW  D  C +WY V+CD TT R+  +++  G+    I    G   Y           +TG I PAI +L  L +L ++ W  +SG +P  ++ L +L  LDL  N ++G IP ++  L  L  L+  R
Sbjct:    3 LKFSTFLSLTLLFSSVLNPALSDL--CNPDDKKVLLQIKKAFGDPY--VLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLS-WTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDR 176          
BLAST of CN185034 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 53/175 (30.29%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  157 MALPLILLTVFLAVISGVSACSPSDXXXXXXXXXXXNEPYLGIFASWTGDNCCTNWYGVSCDPTT--RRVTDISLR-GESEDPILVKAGRSGYMT-----------GSINPAICQLDTLSTLVIADWKGISGQLPSCITSLASLRVLDLVGNKISGKIPDAIGNLQKLTVLKFSR 639
            M L L+L T+ L        C   D           N PY    ASW     C +WY + C   T   RVT + ++ GE    I  + G   Y+T           G I P I +L  L+ L ++ W  ++G +P  ++ L +L  +DL  N +SG IP ++ +L+KL  L+ SR
Sbjct:    5 MTLFLLLSTLLLTTSLAKDLCHKDDKTTLLKIKKSLNNPYH--LASWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLS-WTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSR 176          
BLAST of CN185034 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 48/153 (31.37%), Postives = 69/153 (45.10%), Query Frame = 1
Query:  217 CSPSDXXXXXXXXXXXNEPYLGIFASWTGDNCCTNWYGVSCDPTTRRVTDIS-----LRGESEDPI-------LVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSLASLRVLDLVGNKISGKIPDAIGNLQKLTVLKFSR 639
            C+P D           + PY  I ASW  +  C  WY V CD TT R+  ++     L G+  D +        +   +   +TG I PAI +L  L  +V   W  +SG +P+  + L +L  LDL  N +SG IP ++  L  L  L   R
Sbjct:   30 CNPKDKKVLLQIKKALDNPY--ILASWNPNTDCCGWYCVECDLTTHRINSLTIFSGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLK-MVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDR 179          
The following BLAST results are available for this feature:
BLAST of CN185034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DR100_ARATH4.866e-4953.76DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
PGIP_PYRCO1.210e-1529.05Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP2_ARATH9.586e-1330.29Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP_VITVI2.789e-1231.37Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185034 ID=CN185034; Name=CN185034; organism=Citrus sinensis; type=EST; length=728bp
GCTTTTTCATTCCCAAGCTCTGCACATTTGACATAACCAAACCCCAGCTC
TCTCCAACTCCAAACTTAGCGGCAAAAGCAGCCTCCTTATATCTATCTAA
TAAGGAACAGATTGCATTGATACAGACTCTATACACTCATCTCCCACGCG
AACGTGATGGCATTGCCGTTAATCTTACTCACTGTCTTTCTCGCCGTTAT
CTCGGGCGTTAGCGCCTGCTCGCCATCGGACAAAGCAGCCCTCTTAGCCC
TCAAGTCCTCACTCAACGAACCTTACTTGGGCATCTTCGCCTCCTGGACC
GGCGATAACTGCTGCACCAACTGGTACGGCGTCAGCTGCGACCCAACAAC
TCGCCGAGTCACCGATATTTCGCTTCGTGGTGAATCCGAGGACCCCATAT
TAGTCAAAGCCGGCCGCAGTGGCTACATGACTGGGTCCATTAACCCTGCC
ATTTGCCAGCTCGACACTCTTTCTACCTTAGTCATCGCCGACTGGAAAGG
AATCTCCGGTCAGCTGCCATCCTGTATTACTTCGCTTGCGTCACTTCGTG
TTTTGGACCTCGTCGGTAACAAAATATCGGGTAAGATTCCGGATGCTATC
GGGAATCTTCAGAAACTAACTGTTCTAAAATTTAGCCGACAATGCCGTCT
CTGGGGAAATCCCCATCTTTCGCTTGTTCGGCTTTCTAGTTTTAAAAGCA
TCTGGAATCTCAGCAACAACCCAACTTT
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