CN185023

Overview
NameCN185023
Unique NameCN185023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:1179..1887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185023 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.368e-36
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = -1
Query:  333 KDEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-SDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKV 647
            KDEKVAE+YR S WKPKFDV           AG +DGL  +QK VFDLLYKVADI FL AYK KI+++IEK E QPNLTIG+L+S+V V +++ FK+IFGG KAKV
Sbjct:  390 KDEKVAETYRQSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKV 495          

HSP 2 Score: 40.817 bits (94), Expect = 6.368e-36
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = -3
Query:  646 VGIEIWTMQDVFLFDNILISK 708
            +GIEIWTMQD  LFDNILISK
Sbjct:  370 IGIEIWTMQDGILFDNILISK 390          
BLAST of CN185023 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.166e-34
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = -1
Query:  333 DEKVAESYRASAWKPKFDVXXXXXXXXXXXA-GSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK-AKV 644
            D+KVAESYR + WKPKF V           A GSDG++GFQK VFDLLYK+ADIPFL  +K KI D+IEK EKQPNLTIGILV+VV V +++ F++IFGGKK AKV
Sbjct:  398 DDKVAESYRETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPAKV 503          

HSP 2 Score: 37.3502 bits (85), Expect = 1.166e-34
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  649 VGIEIWTMQDVFLFDNILIS 708
            +GIEIWTMQD  LFDN+LI+
Sbjct:  377 IGIEIWTMQDGILFDNVLIA 396          
BLAST of CN185023 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.712e-33
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  339 KDEKVAESYRASAWKPKFDVXXXXXXXXXXXAGS-DGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 647
            KDEKVAE+YR + WKPKFDV           AGS DGL  +QK VFDLL KVAD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V  ++  K+IFGGKKA
Sbjct:  388 KDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKA 491          

HSP 2 Score: 39.6614 bits (91), Expect = 4.712e-33
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = -3
Query:  646 VGIEIWTMQDVFLFDNILISK 708
            +GIEIWTMQD  LFDNILI+K
Sbjct:  368 IGIEIWTMQDGILFDNILIAK 388          
BLAST of CN185023 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.040e-32
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = -1
Query:  342 KDEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-------SDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK 647
            KD+K+AESYR + WKPKF++           A        S+G+AG QK  FDLLYK+ADI FL   K KII++IEKGEKQPNLTIGI+VSVV V +++ F++IFGGKK
Sbjct:  396 KDDKIAESYRETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKK 504          

HSP 2 Score: 39.2762 bits (90), Expect = 1.040e-32
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3
Query:  646 VGIEIWTMQDVFLFDNILISK 708
            +GIEIWTMQD  LFDN+LI+K
Sbjct:  376 IGIEIWTMQDGILFDNVLIAK 396          
BLAST of CN185023 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.332e-21
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = -1
Query:  339 DGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 545
            DGL G QK VFD+LYK+AD+PFL  +K+K++++IEK E QPN+TIG++VS++ VI ++L K++FGGKKA
Sbjct:  426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKA 494          

HSP 2 Score: 25.7942 bits (55), Expect = 1.332e-21
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = -3
Query:  649 VGIEIWTMQDVFLFDNILIS 708
            +GIE    QD  LFDNILI+
Sbjct:  372 IGIEDLDQQDGILFDNILIA 391          
The following BLAST results are available for this feature:
BLAST of CN185023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CALX2_ARATH6.368e-3663.21Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_SOYBN1.166e-3464.15Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX1_ARATH4.712e-3360.58Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_PEA1.040e-3255.96Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_HELTU1.332e-2159.42Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185023 ID=CN185023; Name=CN185023; organism=Citrus sinensis; type=EST; length=710bp
GAGGCGAATCATCTCAGCATTAGACTGTCTCAAATTATACACTCTTTCAT
ACATTTTAGTGTTTCAAAACAAAGCTCAAAAAGAACGAAAAAGAAGAAGA
AAAAAAAGGAAAAAGCCAAGAATCCAGCTAGGGAAAACAACTAAGCTGAT
AATCTACCAAAAGTGCAGCTAATAGCCACAGGCATCCTGCTTCCATTTGT
TTAATTCTCGCGTCTCCTCCGACGAGCAGGAGCAGCAGCAGTTTCTTCCT
TCTCGGTCTCTTCTTCCTTTTCACCACTGTCCTCTTGTTTGCTCGAGGAA
CTCTCTGCAGCTTCTGTTTCTTTTGGGGGCTCTACTTTAGCCTTCTTTCC
ACCAAAAATGATCTTGAACAGAACTGTAATGATCACCGCCACAACGGAGA
CAAGGATACCAATTGTAAGGTTTGGTTGTTTCTCTCCCTTCTCAATCACA
TCAATGATCTTAAGTTTGTATGCATCCAAGAAAGGAATGTCTGCAACCTT
GTACAAGAGATCAAATACCGTCTTCTGGAAGCCTGCAAGGCCATCTGAAC
CAGCAGCTGCTTCCTCAGCCTTCAGTTTCTCTTTCTCAACATCAAACTTA
GGCTTCCATGCAGAAGCCCGATAGGACTCTGCAACTTTCTCATCCTTTTG
ATATCAAAATGTTGTCAAACAAAAATACATCCTGCATTGTCCAGATCTCA
ATGCCGACAG
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