CN185016

Overview
NameCN185016
Unique NameCN185016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3579 contig Csv1_Contig3579:582..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185016 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.585e-11
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  233 RLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 358
            RLPENAKMD++KASMENGVLTVTVPK EE KKA V++I+ISG
Sbjct:  118 RLPENAKMDKVKASMENGVLTVTVPK-EEIKKAEVKSIEISG 158          
BLAST of CN185016 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  233 RLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 358
            RLPEN KMD++KA+MENGVLTVTVPKA E KKA+V++IQISG
Sbjct:  113 RLPENVKMDQVKAAMENGVLTVTVPKA-ETKKADVKSIQISG 153          
BLAST of CN185016 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  233 RLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 358
            RLPENAKMD++KASMENGVLTVTVPK EE KK +V++I+ISG
Sbjct:  114 RLPENAKMDQVKASMENGVLTVTVPK-EEMKKPDVKSIEISG 154          
BLAST of CN185016 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  233 RLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 358
            RLPENAKMD++KASMENGVLTVTVPK EE KK  V++I+ISG
Sbjct:  114 RLPENAKMDQVKASMENGVLTVTVPK-EEVKKPEVKSIEISG 154          
BLAST of CN185016 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  233 RLPENAKMDRIKASMENGVLTVTVPKAEEA-KKANVRAIQISG 358
            +LPEN KMD++KASMENGVLTVTVPK EEA KKA V++I ISG
Sbjct:  115 KLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
The following BLAST results are available for this feature:
BLAST of CN185016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HSP11_PEA2.585e-1180.9518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS17B_ARATH7.522e-1178.5717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLPE9.824e-1178.5717.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC9.824e-1178.5717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS178_ARATH9.824e-1176.7417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185016 ID=CN185016; Name=CN185016; organism=Citrus sinensis; type=EST; length=358bp
ACAATACAAACGAAATCTAAAATCTCAGATGGAAAGCAGGATTGACAGAC
AAACAGGCACACGAAGAGACAGCGTTACGAAATTACATTATTATTCCCAT
TCTGACATTCCCATTACAAACAAAGACACTCGATCTCAGTAGACAAAGAC
AGACTTCACATGATACATAGACCAAACCAAACCATAAAACTTATCATACA
ATTATTTATTGTCTTTGTTTATTAATTAGTCAGCCAGAGATTTGAATAGC
CCTGACATTAGCTTTCTTGGCCTCCTCCGCTTTAGGAACGGTAACAGTAA
GCACACCGTTCTCCATTGAAGCCTTAATGCGGTCCATCTTCGCATTCTCC
GGCAGCCT
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