CN185012

Overview
NameCN185012
Unique NameCN185012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:763..1140. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.992e-27
Identity = 54/58 (93.10%), Postives = 58/58 (100.00%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct:  229 ITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKSRS 286          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.398e-27
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = -2
Query:  206 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 376
            ITGTGINPARSLGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQIVIRAIPFKS+
Sbjct:  230 ITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 286          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 53/58 (91.38%), Postives = 58/58 (100.00%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+NKDH+WDDHWIFWVGPFIGAALAA+YHQIVIRAIPFKS++
Sbjct:  230 ITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSKS 287          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 51/58 (87.93%), Postives = 58/58 (100.00%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+NKDHAW+DHWIFWVGPF+GAALAA+YHQ++IRAIPFKSR+
Sbjct:  232 ITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKSRS 289          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.885e-27
Identity = 51/58 (87.93%), Postives = 58/58 (100.00%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+N+DHAW+DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:  232 ITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 289          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.291e-26
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+N+DHAW DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:  235 ITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 292          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.291e-26
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+N+ HAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct:  231 ITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSRS 288          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAIIFNKD+AWDDHW+FWVGPFIGAALAA+YH IVIRAIPFKSR+
Sbjct:  229 ITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKSRS 286          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+NKDH+WDDHW+FWVGPFIGAALAA+YH +VIRAIPFKSR+
Sbjct:  229 ITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSRS 286          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII+NKDH+WDDHW+FWVGPFIGAALAA+YH +VIRAIPFKSR+
Sbjct:  229 ITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSRS 286          
The following BLAST results are available for this feature:
BLAST of CN185012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP13_ARATH1.992e-2793.10Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH3.398e-2794.74Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH5.795e-2791.38Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ5.795e-2787.93Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE9.885e-2787.93Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.291e-2687.93Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ1.291e-2689.66Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH2.876e-2691.38Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA2.876e-2687.93Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.876e-2687.93Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185012 ID=CN185012; Name=CN185012; organism=Citrus sinensis; type=EST; length=377bp
AAGATATAACAGAATAATAGTAAAGACTAAAAAAAGAATCCTCCAATCAA
AAGCTTAAAAAAAAAATACAGCAAAGCTAGATAATTTACACACACAATTA
ATTAACATCTTAAACAGTTAAACACCAAATGCACATAAACAAAAAGACAC
GACAAAGAAGATACAAATTAAAAAAAAAAAGGTCCATCAGCGAACTCTCT
TAAGCCCTGGACTTGAAGGGAATGGCCCTGATGACTATCTGGTGGTACAC
AGCAGCCAGTGCAGCTCCAATGAATGGCCCAACCCAGAAGATCCAATGGT
CATCCCAGGCATGGTCTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTA
GCTGGGTTGATGCCAGTTCCTGTGATG
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