CN185010

Overview
NameCN185010
Unique NameCN185010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:766..1117. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  262 TNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  262 TNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  260 TNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  266 TNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = -2
Query:  186 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 329
            TNI+NGG+ECG+  +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  282 TNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = -2
Query:  183 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 329
            TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  203 TNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  268 TNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  273 TNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2
Query:  186 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 329
            TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  270 TNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  278 TNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
The following BLAST results are available for this feature:
BLAST of CN185010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CHI1_SOLTU4.194e-1454.39Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.220e-1352.63Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.220e-1352.63Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC2.719e-1352.63Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_ORYSJ7.910e-1362.50Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC1.033e-1261.22Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI2_TOBAC1.033e-1252.63Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.033e-1252.63Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_ORYSJ2.302e-1260.42Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC3.926e-1247.37Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185010 ID=CN185010; Name=CN185010; organism=Citrus sinensis; type=EST; length=345bp
GGAGAAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTAC
AATAAGAGCGTAACAGTTTAGTTGTCCACCTACAAGTGTGACATCTAAAG
TTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCAT
GATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTT
GGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAG
TGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCA
CATTCAATTCCACCGTTGATTATATTTGTGGGTTAGACCGTATCC
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