CN185007

Overview
NameCN185007
Unique NameCN185007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13204 contig Csv1_Contig13204:637..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_HUMAN (Inhibitor of growth protein 3 OS=Homo sapiens GN=ING3 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 8.830e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGLT     KGKWYCP C
Sbjct:  367 QVSYGEMVGCDNQDCPI-EWFHYGCVGLTEAP--KGKWYCPQC 406          

HSP 2 Score: 31.5722 bits (70), Expect = 8.830e-13
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  351 VDWTYDPNEPRYCICNQ 367          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_CHICK (Inhibitor of growth protein 3 OS=Gallus gallus GN=ING3 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.830e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGLT     KGKWYCP C
Sbjct:  366 QVSYGEMVGCDNQDCPI-EWFHYGCVGLTEAP--KGKWYCPQC 405          

HSP 2 Score: 31.5722 bits (70), Expect = 8.830e-13
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  350 VDWTYDPNEPRYCICNQ 366          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_PONAB (Inhibitor of growth protein 3 OS=Pongo abelii GN=ING3 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.840e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGLT     KGKWYCP C
Sbjct:  352 QVSYGEMVGCDNQDCPI-EWFHYGCVGLTEAP--KGKWYCPQC 391          

HSP 2 Score: 31.5722 bits (70), Expect = 8.840e-13
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  336 VDWTYDPNEPRYCICNQ 352          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_RAT (Inhibitor of growth protein 3 OS=Rattus norvegicus GN=Ing3 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.511e-12
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGLT     KGKW+CP C
Sbjct:  370 QVSYGEMVGCDNQDCPI-EWFHYGCVGLTEAP--KGKWFCPQC 409          

HSP 2 Score: 31.5722 bits (70), Expect = 2.511e-12
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  354 VDWTYDPNEPRYCICNQ 370          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_MOUSE (Inhibitor of growth protein 3 OS=Mus musculus GN=Ing3 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.511e-12
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGLT     KGKW+CP C
Sbjct:  370 QVSYGEMVGCDNQDCPI-EWFHYGCVGLTEAP--KGKWFCPQC 409          

HSP 2 Score: 31.5722 bits (70), Expect = 2.511e-12
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  354 VDWTYDPNEPRYCICNQ 370          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_XENTR (Inhibitor of growth protein 3 OS=Xenopus tropicalis GN=ing3 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.511e-12
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGL+     KGKWYCP C
Sbjct:  366 QVSYGEMVGCDNQDCPI-EWFHYGCVGLSEAP--KGKWYCPQC 405          

HSP 2 Score: 31.5722 bits (70), Expect = 2.511e-12
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  350 VDWTYDPNEPRYCICNQ 366          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: ING3_XENLA (Inhibitor of growth protein 3 OS=Xenopus laevis GN=ing3 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.512e-12
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = -2
Query:  213 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 341
            +VS+G+M+ CDN++C   EWFHY CVGL+     KGKWYCP C
Sbjct:  365 QVSYGEMVGCDNQDCPI-EWFHYGCVGLSEAP--KGKWYCPQC 404          

HSP 2 Score: 31.5722 bits (70), Expect = 2.512e-12
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1
Query:  340 VDQPIDPNEPTYCVCHQ 390
            VD   DPNEP YC+C+Q
Sbjct:  349 VDWTYDPNEPRYCICNQ 365          
BLAST of CN185007 vs. ExPASy Swiss-Prot
Match: YNG2_KLULA (Chromatin modification-related protein YNG2 OS=Kluyveromyces lactis GN=YNG2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  207 RVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRL 341
            RVS+G+M+ACD  NC+  EWFHY+CV LT     KG+WYCP CRL
Sbjct:  240 RVSYGEMVACDGPNCK-YEWFHYSCVNLTEPP--KGQWYCPECRL 281          
The following BLAST results are available for this feature:
BLAST of CN185007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ING3_HUMAN8.830e-1360.47Inhibitor of growth protein 3 OS=Homo sapiens GN=I... [more]
ING3_CHICK8.830e-1360.47Inhibitor of growth protein 3 OS=Gallus gallus GN=... [more]
ING3_PONAB8.840e-1360.47Inhibitor of growth protein 3 OS=Pongo abelii GN=I... [more]
ING3_RAT2.511e-1258.14Inhibitor of growth protein 3 OS=Rattus norvegicus... [more]
ING3_MOUSE2.511e-1258.14Inhibitor of growth protein 3 OS=Mus musculus GN=I... [more]
ING3_XENTR2.511e-1258.14Inhibitor of growth protein 3 OS=Xenopus tropicali... [more]
ING3_XENLA2.512e-1258.14Inhibitor of growth protein 3 OS=Xenopus laevis GN... [more]
YNG2_KLULA9.703e-1162.22Chromatin modification-related protein YNG2 OS=Klu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185007 ID=CN185007; Name=CN185007; organism=Citrus sinensis; type=EST; length=396bp
CTTATACCAATTTGATTTTTCTCTTTAAGCCAGCTTCAGCTAAAGACAAC
TTTGTGCTAGCAAACTTAATTCTATTGATCAAAGCTACAGGGACAAGAAT
TTCTCAGCCTCTTTCTCTGTGAAAGAGATGCTGAGAGAACATGAATAAAT
GATTCACCTGAGGAGTTTAAAATTGTGAATATGTAGAATCATTGACACTG
GGGTAAAAGTCTGCAGGTTGGACAATACCATTTTCCTTTGAATCTTGTCT
CCGGTGTCAGTCCAACGCATGCATAATGGAACCATTCACCTCCTTGGCAG
TTTTCATTATCACAGGCAATCATATCTCCAAATGACACCCTGATGACAGA
CACAGTAGGTAGGTTCATTTGGATCAATGGGCTGATCAACATCCAT
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