CN185000

Overview
NameCN185000
Unique NameCN185000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.444e-20
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  116 DPPPNAAPSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            +P P  AP   +C +V+ D++PCL +++GE K+PS  CCSG +K+S   K+   K++ C CI ++   +      L+  +P+KC I  TLPPI A  DCSK+
Sbjct:   23 EPAPAPAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKI 124          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.341e-18
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 PPPNAAPSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            P P   P    C +V+  ++PCL +++GE K+PS +CCSG +K+S   K+   K++ C CI  +   +      L+  +P+KCGI  TLPPI A  DCSK+
Sbjct:   28 PAPGEGP----CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLT12_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  119 PPPNAAPSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGI-PLTLPPIDAKTDCSKVAI 427
            PP  A  S  +C  V+  L+PCL +++G+ K+PS  CCSGA+++    K+   +   C CIQ ++ +    D  L+  +P+ CGI    LPPID   DC  + +
Sbjct:   30 PPAPAPGSEETCGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLGV 133          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  146 LSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            +SC +V   + PC+SY RG+   PSA CCSG + ++N A++ A ++  C C++ + A V   +      IP KCG+ +    I   TDCS+V
Sbjct:   29 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPY-TISTSTDCSRV 119          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  122 PPNAAPSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGI-PLTLPPIDAKTDCSKVAI 427
            P  A  S  +C  V+  L+PCL +++G+ K+PS  CCSGA+++    K+   +   C CIQ ++ +    D  L+  +P+ CGI    LPPID   DC  + +
Sbjct:   30 PAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLGV 132          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  149 SCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGI-PLTLPPIDAKTDCSKVAI 427
            +C  ++  L+PCL +++G+ K+PS  CCSGA+++    K+   +   C CIQ ++ +    D  L+  +P+ CGI    LPPID   DC  V +
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTVGV 96          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  131 AAPSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            A  + +SC +V   L PC+SY RG   +P  ACCSG ++++  A+S A K+  C C++    S+   +   +  +P KCG+ +   PI   TDC+KV
Sbjct:   22 ATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPF-PISMSTDCNKV 117          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLTP6_AMBAR (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  149 SCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKVAI 427
            +CD V   L PC  +L G+  +PS ACC+G   ++N  K++A +  VC CI++   S+  YD   +PL+  KCG+    P +D   DCSK+ +
Sbjct:   29 TCDTVQNILAPCAGFLTGQ--EPSKACCTGVNNLNNSRKTKADRVAVCNCIKELTKSIA-YDPKRMPLLSTKCGVKPDFPAVDKNLDCSKLPV 118          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  134 APSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            A + +SC +V   + PCLSY+ G    PS++CCSG + ++  A S A ++  C+C++   +S    +      IP KCG+ +   PI    DCSK+
Sbjct:   26 ASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120          
BLAST of CN185000 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  134 APSLLSCDEVILDLVPCLSYLRGETKQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSLASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 421
            A + +SC +V   + PCLSY+ G    PS++CCSG + ++  A S A ++  C+C++   +S    +      IP KCG+ +   PI    DCSK+
Sbjct:   26 ASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAF-PISTSVDCSKI 120          
The following BLAST results are available for this feature:
BLAST of CN185000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
NLT21_PARJU2.444e-2040.20Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT22_PARJU1.341e-1839.60Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT12_PARJU4.037e-1535.58Probable non-specific lipid-transfer protein 1 OS=... [more]
NLTP_MAIZE4.464e-1436.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLT13_PARJU4.464e-1434.95Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT11_PARJU5.830e-1435.11Probable non-specific lipid-transfer protein (Frag... [more]
NLTP3_HORVU9.944e-1436.08Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP6_AMBAR1.696e-1337.63Non-specific lipid-transfer protein OS=Ambrosia ar... [more]
NLTP3_ORYSJ2.215e-1334.38Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.215e-1334.38Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185000 ID=CN185000; Name=CN185000; organism=Citrus sinensis; type=EST; length=590bp
GAGGCACAAATATAAATAAAAAGAAAAAGAAGCAATAATGAATTGGACAA
TTGTGTTCCTACTCCTAGCAAATCTTGCATTACTTTCATGGTCAGCCTCA
TCCATTGAAGACCTTGACCCTCCACCCAATGCAGCTCCCTCTTTGCTTTC
ATGTGATGAGGTCATTCTTGACTTAGTTCCATGCCTCAGTTATCTTAGAG
GTGAAACCAAACAGCCCTCAGCAGCATGCTGTTCCGGCGCTCAGAAAATT
TCTAATGGAGCAAAATCCCAGGCGGCCAAGAAAGATGTATGCACATGTAT
TCAGAAATCTTTGGCATCCGTTGGGCCTTATGATAAAAATCTCATCCCTT
TAATTCCACAGAAATGTGGAATCCCACTTACTCTCCCTCCGATTGATGCT
AAAACGGACTGTTCCAAGGTTGCTATTTATGTTTGATTAATCACGGCGGG
ATTACACGTGGAAATGTTCCAATCTCCATACTGTACGTGCTAGAAGGAAT
TTTATTGTAATACATTATAAATACACAGAATAAATTCTGGCCAGGGACAG
AGCAGTCAGTCAAATGAGGGAGAGAAAAAAAAAAAAAAAA
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