CN184988

Overview
NameCN184988
Unique NameCN184988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184988_ssr205 microsatellite CN184988_ssr205:205..214. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 76/163 (46.63%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  289 NNLPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            NNLPNF LS++LKYVKLGYHY                     S+ T++D S L+N LRF+F +  L    L+  ST Y  +RPR+V+L++F+CYKPD PS +C+R+ FM  + ++GIF+E+ L+F +KILERSG+G  +Y P+A+L  P     M EARKE E
Sbjct:   26 NNLPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPD-PSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPP-NPCMEEARKEAE 186          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 74/167 (44.31%), Postives = 103/167 (61.68%), Query Frame = 1
Query:  277 QEKKNNLPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            +    NLP+F  S+KLKYVKLGYHY                     ST +V D   LW  L++N  ++++C + LVF  T+Y M+RPR VYLVNF+C+KPD  S+ C++K+FM  +   G F+EE L F +KIL+RSG+G  +Y+P+A+L+ P     M EARKE E
Sbjct:   11 ESSDRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDE-SRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPP-NPCMKEARKEAE 175          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 70/162 (43.21%), Postives = 105/162 (64.81%), Query Frame = 1
Query:  295 LPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNEL-RFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            LPNF LS++LKYVKLGYHY                     S+ ++ D + L+N L +F+F +  L    L+F +T+Y  +RPR+++L++FACYKPD+ S +C+R+ FM  + ++GIF+E+ L+F +KILERSG+G  +Y P+A+L  P     M+EARKE E
Sbjct:   22 LPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATS-SSFSLTDLTLLYNHLLKFHFLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDS-SLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPP-NPCMSEARKEAE 180          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.438e-27
Identity = 67/169 (39.64%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  271 TDQEKKNNLPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            T+  ++  LPNF  S+ +KYVKLGYHY                     S LT DD  ++W  L++N    +      +F STVY+MSRPR VYLV+++CY P    Q+  +K FM  +  I  F+E +L F +KILERSG+G  +Y+P+A+   P     MA AR+E+E
Sbjct:   17 TENNERRKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQK-FMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIPPRPTMMA-AREESE 183          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  295 LPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACY-KPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            LP+F  S+ LKYVKLGYHY                     S +  DD  +LW  L++N  ++++C   LVF  TVY+M+RPR VYLV+F+CY  PD+     +R  FM+ +   G F +  L F +KILERSG+G  +YVP+AM   P    +MA AR+E E
Sbjct:   29 LPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYAR--FMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPP-RISMAAAREEAE 187          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  286 KNNLPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXX--STLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKE 771
            +  LP+F  S+ LKYVKLGYHY                       S    + + KLW+   ++  T++      V T+ VY MSRPR VYL++FACYKP +  ++ +++ F+++A K G F EETL F K+IL+ SG+G+ +YVP++ + +      M E R+E
Sbjct:   36 RRRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSREEIWKKLWD---YDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKV-TKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRS-ISSSENITTMKEGREE 194          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  286 KNNLPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXX---STLTVDDFSKLWNE--LRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            +  LP+   S+KLKYVKLG H                         + LT D FS+LW+   ++ +  T L CLV L F  T+Y+ +R + VYLV+F+CYKP++  ++ S   F+ +  + G F+++T+ F ++I  R+G+G+ +Y+P+ +   P  + NM+EAR E E
Sbjct:   31 RRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKI-SVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPP-KLNMSEARAEAE 197          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  295 LPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            +P F  S+KLKYVKLGY Y                       +  ++   +WN L+F+   +L     ++F STVY MS+PR +YLV+++CYKP    ++     FM+ +  I     +++ F  +ILERSG+G  + +P A+   P     M  AR E +
Sbjct:    6 MPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRV-PFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPP-TPTMDAARSEAQ 164          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.355e-15
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  328 YVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            YVKLGYHY                     S L+++     +N   F F   L  + S+VF      MSRPR +YL++++CY P + SQ  S + FM  +S I  FSE +L F +KIL RSG+G  +Y+P ++   P     MA AR+E E
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFMNVSLLSLNHLQLYYNSTGFIFVITLAIVGSIVF-----FMSRPRSIYLLDYSCYLPPS-SQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPP-RPTMAAAREEAE 157          
BLAST of CN184988 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  295 LPNFFLSIKLKYVKLGYHYXXXXXXXXXXXXXXXXXXXXXSTLTVDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETE 777
            + +F  S+KLKYVKLGY Y                       +  ++   + N L F    +L     ++F STVY MS+PR VYLV+++CYKP    ++     FM+ +  I   + +++ F  +ILERSG+G  + +P A+   P     M  AR E +
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATVAIELLRMGPEEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRV-PFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPP-TPTMESARNEAQ 159          
The following BLAST results are available for this feature:
BLAST of CN184988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
KCS19_ARATH3.430e-3546.633-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS11_ARATH2.904e-3444.313-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS17_ARATH9.668e-3043.213-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS9_ARATH3.438e-2739.643-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH3.802e-2641.983-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH1.653e-2136.593-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS1_ARATH8.203e-2134.323-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS6_ARATH4.658e-1632.303-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS2_ARATH1.355e-1536.67Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS5_ARATH4.360e-1431.683-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184988 ID=CN184988; Name=CN184988; organism=Citrus sinensis; type=EST; length=779bp
GAGGCATTTGTTGGCTTCCGTTCATATACACTAGCTTCCGCTTTTAAATT
TTCTTCAGCTCCTGCAACTTCTATTACTACTTAAAACCCTAGCTGGTTAG
CATTTACCCTTCATCTTTTATTTCTTATATATTCATTTATTAGACATATT
TTACGCACTGTCAAAGTTAGATATCCTCTTTAAGCTAATTTCCGAACTTT
TATCCACACACACATCTAGGTGATTTTCTTAGTGGCTTTTTGGTTTGTTT
TTGGCTATCAAATAATGGCCACTGATCAAGAAAAGAAGAACAATCTTCCC
AATTTCTTCCTATCCATCAAGCTCAAATATGTGAAGCTTGGTTATCACTA
TCTGATCTCCAATGCTTTATATCTCTTGCTTCTTCCACTCCTTTTCATTG
TTTTGACTCATCTCTCAACTTTAACAGTTGATGATTTCTCCAAGCTATGG
AACGAGCTCAGGTTCAACTTTGGGACACTGCTTTTATGCTTGGTTTCTCT
TGTATTTACATCGACCGTTTACCTAATGAGTCGCCCGAGAAAAGTTTACT
TGGTGAACTTTGCTTGTTACAAGCCTGACAATCCATCTCAAATGTGCAGC
CGAAAACTTTTCATGCAAATAGCGAGCAAAATTGGGATATTTTCAGAGGA
AACTTTATCCTTTCACAAGAAAATTCTAGAGAGATCCGGGATGGGGAATA
TGTCATACGTCCCGAAAGCCATGTTGGACAACCCGGCGGGTGAGAAAAAT
ATGGCGGAGGCAAGGAAGGAGACTGAGGG
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