CN184987

Overview
NameCN184987
Unique NameCN184987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.061e-28
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = -2
Query:  167 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEK-NPWMDEIDNFPVHVPKVMPI 379
            SS LWYELAY EAKGRI++GD+TWQIAFGSGFKCNSAVW+AL+TI+P  EK NPW+DEID+FPV VP++ PI
Sbjct:  455 SSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWKALRTIDPMDEKTNPWIDEIDDFPVQVPRITPI 526          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.222e-28
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  167 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPVHVPKVMPI 379
            SS LWYELAY EAKGRI+KGD+ WQIAFGSGFKCNS+VWRA++++NP  EKNPWMDEI  FPV VPKV  I
Sbjct:  439 SSSLWYELAYSEAKGRIKKGDRIWQIAFGSGFKCNSSVWRAVRSVNPKKEKNPWMDEIHEFPVEVPKVSTI 509          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.540e-27
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = -2
Query:  167 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEK----NPWMDEIDNFPVHVPKVMPI 379
            SS LWYELAY EAKGRI++GD+TWQIAFGSGFKCNSAVWRAL+TI+P+ EK    NPW+DEI  FPV VP+  P+
Sbjct:  447 SSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPWIDEIHEFPVPVPRTSPV 521          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  185 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEK---NPWMDEIDNFPVHV 379
            SS LWYELAY EAK R+++GD+ WQ+AFGSGFKCNS VWRAL+TI PA+E    NPW D +  +PVHV
Sbjct:  392 SSSLWYELAYVEAKCRVKRGDRVWQLAFGSGFKCNSIVWRALRTI-PANESLVGNPWGDSVHKYPVHV 458          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  185 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEK---NPWMDEIDNFPVHV 379
            SS LWYELAY EAK R+++GD+ WQ+AFGSGFKCNS VWRAL+TI PA+E    NPW D +  +PVHV
Sbjct:  399 SSSLWYELAYVEAKCRVKRGDRVWQLAFGSGFKCNSIVWRALRTI-PANESLVGNPWGDSVHKYPVHV 465          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = -2
Query:  167 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPVHVPKVMPI 379
            SS LWYEL+Y E+KGR+R+GD+ WQIAFGSGFKCNSAVW+  +TI    +  PW D ID +PV +P+V+ +
Sbjct:  428 SSSLWYELSYIESKGRMRRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPKD-GPWSDCIDRYPVFIPEVVKL 497          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = -2
Query:  191 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPV 379
            SS +WYELAY EAKGR+R+G++ WQIAFGSGFKCNSA+W AL+ + P++  +PW D ID +PV
Sbjct:  451 SSSIWYELAYIEAKGRMRRGNRVWQIAFGSGFKCNSAIWEALRHVKPSN-NSPWEDCIDKYPV 512          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  185 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPVHV 379
            SS +WYELAY EAKGR+RKG++ WQIAFGSGFKCNSAVW AL+ + P+   NPW   I  +PV +
Sbjct:  422 SSSIWYELAYTEAKGRMRKGNRVWQIAFGSGFKCNSAVWVALRNVEPS-VNNPWEHCIHRYPVKI 485          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = -2
Query:  191 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPV 379
            SS +WYELAY EAK  +R+GD+ WQIAFGSGFKCNS VW+A++ +      NPW+D I+ +PV
Sbjct:  486 SSGIWYELAYMEAKESVRRGDRVWQIAFGSGFKCNSVVWKAMRKVKKPTRNNPWVDCINRYPV 548          
BLAST of CN184987 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.751e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = -2
Query:  191 SSCLWYELAYFEAKGRIRKGDKTWQIAFGSGFKCNSAVWRALKTINPAHEKNPWMDEIDNFPV 379
            SS +WYELAY EAKGR++KG++ WQIAFGSGFKCNSAVW AL  + P+   +PW   ID +PV
Sbjct:  447 SSSIWYELAYIEAKGRMKKGNRVWQIAFGSGFKCNSAVWVALNNVKPS-VSSPWEHCIDRYPV 508          
The following BLAST results are available for this feature:
BLAST of CN184987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
KCS19_ARATH3.061e-2876.393-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS11_ARATH5.222e-2876.063-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS17_ARATH7.540e-2772.003-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS14_ARATH1.377e-2066.18Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS13_ARATH1.377e-2066.183-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS6_ARATH2.349e-2059.153-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH1.523e-1963.493-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS2_ARATH1.684e-1863.08Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS10_ARATH1.684e-1858.733-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS9_ARATH3.751e-1863.493-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184987 ID=CN184987; Name=CN184987; organism=Citrus sinensis; type=EST; length=380bp
AGGAGAGGATCTTATTGAAATTTAAATTCTACATGCATTCTACTAATTAA
CCTTAAAAGAGATATACCACTTCTCTAAGCCTGCAGCATTAATTATTGCA
GCAATATTTTATATAAATAGTTACTAAACGGGCATAAACGTCCCCAACGT
CCAACCATTAAAAATCAATTGGCATAACTTTTGGCACATGAACTGGAAAG
TTATCAATTTCATCCATCCAAGGATTCTTCTCATGAGCAGGATTGATAGT
CTTCAATGCACGCCACACAGCACTGTTGCACTTGAATCCTGATCCAAATG
CTATCTGCCAAGTCTTGTCACCTTTCCGAATTCTTCCCTTGGCCTCAAAG
TAAGCCAATTCATACCACAAACAACTGCTT
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