CN184986

Overview
NameCN184986
Unique NameCN184986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.215e-85
Identity = 142/235 (60.43%), Postives = 176/235 (74.89%), Query Frame = -3
Query:  147 DYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 851
            DYPFA DGL LWD IK+WVTDYV HYYPD  L+ SDEELQ WW+E+R +GHGDK+DE WWPVL +  DLI  +T+I WV SG HAAVNFGQY Y  YFPNRPT  R  MP EDP+D+  + F+E PE  LL T+P+Q+QAT V+  LD+LS HSPDE+Y+G+  E +W  + +I  AFE+F+G+L  L+G+I+ RN +  LKNR GAG + YELL P ++  GVTG GVPYSISI
Sbjct:  663 DYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSE-HGVTGMGVPYSISI 896          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.493e-78
Identity = 133/236 (56.36%), Postives = 172/236 (72.88%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            +DYP+A DGL +W  IKQW +DYV  YY     V  DEEL+AWW E+RT GH DK+DE WWPV ++ ++L+  +T I+WV SG HAAVNFGQY YA YFPNRPT+ R N+P E+  DDE + F  RPE  LL + P+Q QA  V++ LD+LS+HSPDE+Y+G+Y EPAW  + ++K AFEKF GRL E +G I++RN +   KNR GAG +PYELL P ++  GVTG+G+P SISI
Sbjct:  662 KDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE-PGVTGRGIPNSISI 896          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 1.146e-74
Identity = 134/237 (56.54%), Postives = 170/237 (71.73%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDD-EWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            EDYPFA DGL +WD IK WV  YV+ +YPD   V  DEELQA+WTE+RT GHGDK+D  WWP L+SP+ L  T+T+IVWVA+  HAAVNFGQY++  YFPNRP+IAR  MP E+P D    + F + P+ AL   FP+Q QAT V++VLDVLS+HS DE+YLG      W  D  ++ A++ F  RL E++G+I+ RN D+ LKNR GAG LPY+L+ P +D SGVTG G+P S SI
Sbjct:  689 EDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD-SGVTGMGIPNSTSI 924          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.429e-74
Identity = 133/237 (56.12%), Postives = 168/237 (70.89%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDD-EWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            EDYPFA DGL +WD IK WV  YV+ +YPD   V  DEELQA+WTE+RT GHGDK+D  WWP L+SP+ L  T+T+IVWVA+  HAAVNFGQY++  YFPNRP+IAR  MP E+P D    + F + P+ AL   FP+Q QAT V++VLDVLS HS DE+YLG      W  D  ++ A+  F  RL E++G+I+ RN D+ LKNR GAG LPY+L+ P +D +GVTG G+P S SI
Sbjct:  706 EDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD-AGVTGMGIPNSTSI 941          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.450e-69
Identity = 129/245 (52.65%), Postives = 163/245 (66.53%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPL---------ADKSGVTGKGVPYSISI 854
            EDYP+A DGL +WD IKQW   YV HYYP  + +  DEELQAWWTE+RT GH DKQDE WWP L+S ++L  T+ +I+WV SG HAAVNFGQY  A Y PNRPT+AR NMP E   DD  + F E PE  LL TFP+Q Q+  V+++LD+LS HS DE+Y+G + EPAW +D +I  AFE+F+    ++   ++  N D + KNRHGAG +PY LL P           D+  V   G+P SISI
Sbjct:  693 EDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDD-MRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.970e-64
Identity = 115/236 (48.73%), Postives = 156/236 (66.10%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            EDYP+A DGL++W  IK WVTDY S YY     +  D ELQAWW E+R VGHGDK++E WWP + +P++LID+ T+I+W+AS LHAAVNFGQY YA Y PNRPT++R  MP  +P   E++     P+ A L T   Q Q    +S++++LS H+ DE YLG+   P W +DK    AF++F  +L +++  I  RN D  L NR G  + PY LL P ++  G+TGKG+P S+SI
Sbjct:  629 EDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMP--EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSE-GGLTGKGIPNSVSI 861          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.189e-63
Identity = 119/240 (49.58%), Postives = 153/240 (63.75%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPL----ADKSGVTGKGVPYSISI 854
            EDYP+A DGL +WD IKQW +DYV+HYYP    +  DEELQ WWTE+RT GH DKQDE WWP L+  + L+  + +I+WV S  HAAVNFGQY  A Y PN P+IAR NMP E    +E   F   PE   L T P+Q Q   V++ LD+LS+H+ DE+Y+G + EPAW  D  +  AF+ FQ ++ ++   +   N D + +NRHGAG +PY LL PL     D   V   G+P SISI
Sbjct:  694 EDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.649e-63
Identity = 117/238 (49.16%), Postives = 158/238 (66.39%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPA--WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            +DYP+A DGL +W  IK  V  YV H+Y D   + SD ELQAWW EI+  GH DK+DE WWP LN+ +DL   +T+++W+ASG HAA+NFGQY +  Y PNRPT+ R  +P E  +D ++++F   P+ + L + P Q QAT V++V + LS HSPDE+YL +  E    W +D+ +   F KF   L++++  IN RN DK LKNR GAG  PYELL+P     GVTG+G+P SISI
Sbjct:  683 DDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLP-TSPHGVTGRGIPNSISI 917          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.706e-63
Identity = 113/236 (47.88%), Postives = 156/236 (66.10%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 854
            +DYP+A DGL++W  IK WVTDY S YY     +  D ELQAWW E+R VGHGDK++E WW  + +P++LID+ T+I+W+AS LHAAVNFGQY YA Y PNRPT++R  MP  +P   E++   + P+ A L T   Q Q    +S++++LS H+ DE YLG+   P W +DK    AFE+F  +L +++  I  RN +  L NR G  + PY LL P ++  G+TGKG+P S+SI
Sbjct:  628 DDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMP--EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSE-GGLTGKGIPNSVSI 860          
BLAST of CN184986 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 6.524e-62
Identity = 116/240 (48.33%), Postives = 154/240 (64.17%), Query Frame = -3
Query:  147 EDYPFAQDGLDLWDIIKQWVTDYVSHYYPDPSLVESDEELQAWWTEIRTVGHGDKQDETWWPVLNSPKDLIDTITSIVWVASGLHAAVNFGQYEYAAYFPNRPTIARANMPNEDPSDDEWQIFFERPEAALLTTFPNQRQATAVISVLDVLSAHSPDEDYLGKYMEPAWGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMP----LADKSGVTGKGVPYSISI 854
            EDYPFA DGL++W  IK WVT+Y + YY +   V++D E+Q+WWTE+RT GHGDK+ E+WWP + +  DLI+T T I+W+AS LHAAVNFGQY YA + PNRPT++R  MP  +P  DE+    E  + A L T   Q Q    IS++++LS HS DE YLG+   P W  D     AF++F   L  ++  I  RN DK  KNR G  ++PY LL P       + G+TGKG+P S+SI
Sbjct:  649 EDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMP--EPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
The following BLAST results are available for this feature:
BLAST of CN184986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ARATH3.215e-8560.43Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU6.493e-7856.36Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ1.146e-7456.54Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ7.429e-7456.12Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX21_HORVU1.450e-6952.65Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOLTU6.970e-6448.73Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX22_HORVU1.189e-6349.58Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH2.649e-6349.16Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXA_SOLLC7.706e-6347.88Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX5_ARATH6.524e-6248.33Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184986 ID=CN184986; Name=CN184986; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTGAATGCACAAAGTATCCCACCAGGATTTTCTTAACATACAATT
CAAGTTTCGGAGTACCCACTTGTCATTGTTTTCCGCATTATTAGAACTAG
CTTATTCATTACAAGTAAATAAAGGAAAAGTGCAATTTGAACTCTAGATA
GAGATGCTGTACGGAACTCCTTTTCCTGTGACACCAGATTTGTCCGCAAG
TGGCATCAAGAGCTCATATGGCAGACTGCCAGCTCCATGTCTATTCTTCA
AATTCTTATCTGCATTCCTCAAATTAATAATCCCTTTAAGCTCCATCAAC
CTGCCCTGAAACTTTTCGAAGGCACCCTTTATAATTTTATCTTCACCCCA
CGCTGGTTCCATGTATTTCCCCAAATAATCCTCATCAGGCGAATGAGCCG
ATAGCACGTCGAGAACACTGATTACTGCAGTAGCTTGCCTCTGATTGGGG
AAGGTAGTCAAAAGTGCAGCTTCAGGTCTTTCAAAGAAAATTTGCCATTC
ATCATCAGATGGATCTTCATTTGGCATGTTGGCTCTTGCAATAGTTGGCC
TATTGGGAAAGTAGGCTGCATATTCGTACTGGCCAAAATTCACAGCTGCA
TGGAGACCAGAAGCTACCCAAACGATACTTGTGATGGTATCAATTAAATC
CTTAGGGCTATTGAGGACAGGCCACCATGTTTCATCCTGCTTGTCACCGT
GTCCGACAGTTCGAATTTCAGTCCACCAAGCTTGGAGCTCTTCATCAGAC
TCTACAAGGCTTGGATCGGGATAGTAGTGACTCACATAGTCGGTAACCCA
TTGTTTTATGATATCCCAGAGATCAAGACCGTCCTGAGCAAAAGGGTAGT
CTTCAA
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