CN184985

Overview
NameCN184985
Unique NameCN184985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13070 contig Csv1_Contig13070:5..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.852e-36
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 3
Query:  117 QNQAAGTGIAAP-QLQPRGNRPARGTTQGSLNPQECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            QNQ +   I    Q Q + N    G ++G L+PQ+C PKC YRCS TSYKKPC+FFCQKCCAKCLCVPAGT GNKQ+CPCYN+WKTKRGGPKCP
Sbjct:   19 QNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  204 LNPQECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            L P +C P+C YRCSATS+KKPC+FFCQKCCA CLCVP G  GNKQ+CPCYN+WKT+ G PKCP
Sbjct:   33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  198 GSLNPQECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            GSL   +C  +CD RC  T Y K C+ FC KCC KCLCVP G  GNKQ C CYN+WKT+ GGPKCP
Sbjct:   41 GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 29/59 (49.15%), Postives = 33/59 (55.93%), Query Frame = 3
Query:  219 CAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            C  KC  RCS       CL +C  CC +C CVP+GT GNK  CPCY   K  +G  KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 3
Query:  216 ECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            +C  +C  RCS +S  K CL  C  CC++C CVP GT+GN   CPCY S  T  G  KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 3
Query:  216 ECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            +C  +C  RCS +S    CL  C  CC +C CVP GT GN   CPCY S  T+ G  KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CN184985 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 3
Query:  216 ECAPKCDYRCSATSYKKPCLFFCQKCCAKCLCVPAGTNGNKQTCPCYNSWKTKRGGPKCP 395
            +C   C  RC  +S  + C   C  CCA+C CVP GT+GN +TCPCY S  T     KCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
The following BLAST results are available for this feature:
BLAST of CN184985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GAST1_SOLLC5.852e-3668.09Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC5.866e-2873.44Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH1.653e-2262.12Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
SNAK1_SOLTU9.092e-1349.15Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA2_ARATH1.551e-1250.00Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH1.313e-1148.33Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
SNAK2_SOLTU6.516e-1146.67Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006I02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184985 ID=CN184985; Name=CN184985; organism=Citrus sinensis; type=EST; length=542bp
GAGGCTCAAATCCACTTCAAGCTCTTATCGTTGTGTTGTTTCTTCTCCAA
AGAATAATGGCTAGAATGCTGAGAATTGTCGTGTTATTTGTGGCATTGAT
GGTTGTTTTAGTGGCACAAAACCAGGCTGCGGGCACAGGAATTGCCGCAC
CTCAGCTACAGCCACGAGGCAATCGCCCTGCGCGTGGCACCACCCAAGGG
AGCCTTAATCCTCAAGAATGTGCTCCAAAATGCGATTATAGATGCTCAGC
AACTTCATACAAGAAGCCGTGCCTGTTTTTCTGCCAAAAATGTTGTGCAA
AGTGCTTATGTGTGCCGGCAGGCACAAATGGGAACAAGCAAACGTGCCCT
TGCTACAACAGCTGGAAGACAAAGAGAGGAGGACCAAAATGCCCTTGAAT
TAATAGTATCAGTTTATAGAAATAAAATTCTCTATCGACACTAATCAGTT
ATATATTTCCTATAATGCTTATTTTGCTATTGTAGCCAATCTTTCTTGGG
CTCGTATATATAGCAAGCACTAGTAATGCATTTTTCAATCAA
back to top