CN184979

Overview
NameCN184979
Unique NameCN184979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2457 contig Csv1_Contig2457:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.273e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.556e-29
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.103e-26
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.154e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.358e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.358e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 3.358e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 9.771e-24
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 276
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.407e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CN184979 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.407e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   73 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 279
            MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of CN184979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARATH1.273e-3194.2060S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC1.556e-2989.8660S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE2.103e-2681.1660S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_MOUSE1.154e-2476.8160S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_RAT3.358e-2475.3660S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN3.358e-2475.3660S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN3.358e-2475.3660S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA9.771e-2475.0060S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_ORNPR2.407e-2274.2960S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_IXOSC2.407e-2274.2960S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184979 ID=CN184979; Name=CN184979; organism=Citrus sinensis; type=EST; length=455bp
GAGGCTTAGCTCTAGGGTTTGGGGGCGCGCTTAAATTCGAAAACTCGAGT
GGAACAAAAACCTCGACCGAGAATGCCTAAGCAGATACACGAGATCAAGG
ATTTCCTTCTCACCGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAG
AGAAGCAGAGATGTTGTCAAGTTCAAGGTTCGCTGCTCTAAGTACCTTTA
CACCCTTTGTGTGTTCGACTCAGAGAAGGCCGACAAGTTGAAGCAGTCTC
TTCCTCCAGGTTTGAGCGTCCAAGACCTGTGAGTGTATGCGAGCTTGTCT
TAATTTACTAGGCGATGAGAGCTGCTTTTTTACATTTCATGCTGTTTTCG
CATAGTAGAAATATTGTGTGGATTTGAGCGTATTGGATAATTGTTATTTT
TAGAGGATGCGGATCTTTTTGCCAGTTGATTTATGGACGTTGAAACTTGG
TTTGC
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