CN184967

Overview
NameCN184967
Unique NameCN184967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3336 contig Csv1_Contig3336:469..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 1.022e-102
Identity = 186/215 (86.51%), Postives = 193/215 (89.77%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            AIMEAMEAELDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF+ DPQT               DAAA I+ES T+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK LREAGVTVVESPAKIGS M E+FKQRG+
Sbjct:  115 AIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 3.287e-101
Identity = 181/215 (84.19%), Postives = 193/215 (89.77%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            AIME + AELDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAALIKE+GT+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+LR+AGV VVESPAKIG+AM E+F++RGL
Sbjct:  125 AIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGL 339          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 9.563e-101
Identity = 182/215 (84.65%), Postives = 191/215 (88.84%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            AIME +EAELDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAALIK SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+L +AGV VVESPAKIGSAM E+F++RGL
Sbjct:  130 AIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGL 344          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 1.696e-81
Identity = 145/213 (68.08%), Postives = 173/213 (81.22%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 642
            AI EA++AE++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDPFNGTNF+DCL+ F  DPQT               +AA  + ++ T+KPVV+FIAGL+APPGRRMGHAGAI+SGGKG A  KI+ L+ AGVTV  SPAK+G  +L+   ++
Sbjct:  100 AIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.292e-78
Identity = 145/213 (68.08%), Postives = 166/213 (77.93%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE---SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 633
            AI EAM+AE+ LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VG GQ+ CVGIGGDPFNGTNF+DCL  FL DP+T               +AAA +KE       KPVV+FIAG+TAPPGRRMGHAGAI+SGGKGTA DKI  LREAGV V +SPAK+G++M   F
Sbjct:  106 AIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATAF 318          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.940e-77
Identity = 144/216 (66.67%), Postives = 168/216 (77.78%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 642
            AI EA++AE+ LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGTNF+DCL+ FL DP T               +AA  +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  128 AINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEKR 343          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 285.804 bits (730), Expect = 1.643e-76
Identity = 142/216 (65.74%), Postives = 168/216 (77.78%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 642
            AI EA++AE+ LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGT+F+DCLE FL DP T               +AAA +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  128 AINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 2.145e-76
Identity = 145/216 (67.13%), Postives = 167/216 (77.31%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 642
            AI EA+EAE+ LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T               +AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  128 AIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYKEFEKR 343          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.065e-75
Identity = 137/213 (64.32%), Postives = 169/213 (79.34%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 639
            ++I+EA++AE+++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T               DAA  IK+S  +KP+V+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  M ++  +
Sbjct:   80 DSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.065e-75
Identity = 143/216 (66.20%), Postives = 167/216 (77.31%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 642
            AI EA++AE+ LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T               +AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  128 AINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
The following BLAST results are available for this feature:
BLAST of CN184967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCA_ORYSJ1.022e-10286.51Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA2_ARATH3.287e-10184.19Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_ARATH9.563e-10184.65Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA_DICDI1.696e-8168.08Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_CAEEL2.292e-7868.08Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_RAT1.940e-7766.67Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE1.643e-7665.74Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN2.145e-7667.13Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICFE1.065e-7564.32Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_PIG1.065e-7566.20Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184967 ID=CN184967; Name=CN184967; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTAT
CACCGAAGGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAA
ACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATC
AAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAACC
TGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAG
TTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTATA
GGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAGTT
CCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGGTG
GGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGACTGAG
AAGCCCGTTGTTGCTTTTATTGCTGGACTAACAGCTCCCCCTGGCCGCCG
TATGGGTCATGCTGGAGCTATCGTCTCTGGTGGGAAGGGCACGGCTCAAG
ACAAAATTAAGACCCTCAGGGAAGCCGGAGTGACAGTGGTAGAGTCTCCC
GCAAAAATTGGCTCTGCTATGCTTGAGGTTTTCAAGCAACGTGGCCTGGC
AAGTTAGTTTTGATAAAAGAAACACTAGATTTCTATACAGCTTTTTTGCA
CAATGTCAAAAAATTGTGCTTCTCAGCATTTTTATT
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