CN184966

Overview
NameCN184966
Unique NameCN184966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.428e-54
Identity = 110/178 (61.80%), Postives = 137/178 (76.97%), Query Frame = 2
Query:  131 KNNLASFTNLKK---INFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQPTSDLVWE-KAEKNT 652
            K++  SF +L K   +NF +  + ++V C A++   QD   +    G ++RVFNFAAGPA LPE VLLKAQ++LYNWRGSGMSVMEMSHRGKEF SII+KAESDLR LL IPQEYSVLFLQGGATTQFAA+PLNLC  +D VD++VTGSW DKA KEA+K  +  ++++W  K+EK T
Sbjct:   23 KSSSQSFLHLSKPNTVNFVSKTKPVAVRCVASTTQVQDGVRSG-SVGSQERVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCK--TNVIWSGKSEKYT 197          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.890e-52
Identity = 106/176 (60.23%), Postives = 121/176 (68.75%), Query Frame = 2
Query:  122 PLNKNNLASFTNLKKINFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQPTSDLVWEKAEKN 649
            P N       T+   +NF        +TCSA    T   T  +I    E+RVFNFAAGPA LPE VL KAQSEL NWRGSGMSVMEMSHRGKEF SII+KAE+DLR LLNIP +Y+VLFLQGGA+TQF+A+PLNLCTP+  VDYIVTGSW DKA KEA K    +S  +W     N
Sbjct:   18 PFNPQQNCQQTHFLPLNFKIRNPISRITCSATPTATAVSTTTKIDQRSEERVFNFAAGPAVLPENVLQKAQSELLNWRGSGMSVMEMSHRGKEFTSIIDKAEADLRTLLNIPSDYTVLFLQGGASTQFSAIPLNLCTPDSAVDYIVTGSWGDKAAKEAAKYAAVSS--IWSGKSDN 191          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ACIAD (Phosphoserine aminotransferase OS=Acinetobacter sp. (strain ADP1) GN=serC PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.144e-34
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR K++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+P+NL   N   DYI TG WS+KA KEAQ+
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSKDYVAVAEKAEADLRKLMNIPENYQVLFLQGGASLQFSAIPMNLLGKNSKADYIHTGIWSEKALKEAQR 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ACIBT (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=serC PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA++
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKR 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ACIBC (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ACICU) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA++
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKR 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ACIB5 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB0057) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA++
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKR 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ACIB3 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB307-0294) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 66/110 (60.00%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA++
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKR 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_CHRVO (Phosphoserine aminotransferase OS=Chromobacterium violaceum GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            +V+NF+AGPA LP +VL +AQSEL +W GSGMSVMEMSHRGKEF  II  AE DLR L+ IP  Y VLFLQGGA+ QFA  PLNL    D +D + TG WS  A KEA++
Sbjct:    3 KVYNFSAGPAVLPHQVLAEAQSELLDWHGSGMSVMEMSHRGKEFMEIIHDAEQDLRQLMGIPAGYKVLFLQGGASLQFAMAPLNLLGDKDSIDIVNTGHWSKLAIKEAKR 112          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_PSESM (Phosphoserine aminotransferase OS=Pseudomonas syringae pv. tomato GN=serC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R FNF AGPA LPE VLL+AQ+EL +W G G+SVMEMSHR  EF SI  KAE DLR LL+IP  Y VLFLQGGA+ QFA + LNL   N   DYI TG WS KA  EA +
Sbjct:    4 RAFNFCAGPAALPEAVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIANKAEQDLRDLLSIPSNYKVLFLQGGASQQFAQIALNLLPENGKADYIDTGIWSQKAIDEASR 113          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_PSEPK (Phosphoserine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=serC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 601
            R FNF AGPA LP+ VL +AQ+E+ +WRG G+SVMEMSHR  ++ +I EKAE DLR LL++P  Y VLFLQGGA+ QFA +PLNL   N   DYI TG WS KA +EA++
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAEMLDWRGKGLSVMEMSHRSDDYVAIAEKAEQDLRDLLSVPSNYKVLFLQGGASQQFAEIPLNLLPENGTADYIETGIWSKKAIEEARR 113          
The following BLAST results are available for this feature:
BLAST of CN184966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ARATH5.428e-5461.80Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL3.890e-5260.23Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_ACIAD2.144e-3460.91Phosphoserine aminotransferase OS=Acinetobacter sp... [more]
SERC_ACIBT1.390e-3360.00Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIBC1.390e-3360.00Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB51.390e-3360.00Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB31.390e-3360.00Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_CHRVO9.009e-3362.73Phosphoserine aminotransferase OS=Chromobacterium ... [more]
SERC_PSESM1.177e-3263.64Phosphoserine aminotransferase OS=Pseudomonas syri... [more]
SERC_PSEPK1.177e-3260.00Phosphoserine aminotransferase OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184966 ID=CN184966; Name=CN184966; organism=Citrus sinensis; type=EST; length=652bp
GAGGAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTCTCTCTTTCAACTA
GCAGCTGCTAAGCCATGGCAACGACGACATCATCACCTCACTCACTGTTT
CTCCAGAACCGTAATAGCCACCCACTCAATAAAAACAATCTCGCATCTTT
CACCAACCTTAAAAAGATCAATTTTTTTAACACCAAAAGAGCCATTTCAG
TCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCGAACGGCGGCCCAG
ATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCGCTGCGGGCCCCGC
TAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCGGAGCTTTACAACT
GGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCATAGAGGTAAAGAA
TTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTAGAGCCCTCTTGAA
TATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGCGGCGCTACGACAC
AGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAATGACCCGGTCGAT
TATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTAAAGAAGCGCAAAA
AATTTTGCAACCCACAAGTGATTTGGTCTGGGAAAAAGCTGAAAAGAACA
CA
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