CN184964

Overview
NameCN184964
Unique NameCN184964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184964 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 58/129 (44.96%), Postives = 88/129 (68.22%), Query Frame = -2
Query:  318 LVSIQALILNAKPFFNEPGSEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNG 704
            LVSIQALILN KP+FNEPG  +S     GE  S+ Y+++ F+ SLKTM+Y++R+PP+HFE+ V  H+   +HDI+ AC AY  GA +G + +K G  ++++ + S SK+FK  +   M+ +V+ F + G
Sbjct:  383 LVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAYKAGAPLGSM-VKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLG 510          
BLAST of CN184964 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  303 LVSIQALILNAKPFFNEPGSEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQ-VKWSSSKEFKDKLGQMMK-ILVNNFTRNGSTGCE 704
            LVSIQ LILN KP+FNEPG E+S     GE  S++Y+++ FI SLKTM+YT+R+PPK+FED    HF + AHD+L AC AY +GA  G+  +  G P+V++     SS +F+  +   ++ +L+  F   G  G E
Sbjct:  444 LVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNGATPGY--LVKGAPDVEENSAGMSSLKFRTDVATFVETVLLKEFILLGVLGLE 577          
BLAST of CN184964 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = -2
Query:  285 LVSIQALILNAKPFFNEPGSEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNGSTGCEQFLPST 704
            L+S QAL+LN KP+FNE G +K     EGEK S SYN++AF+ + K+M+  LRKPPKHFE LV  HF + A  +L ACKAYM+G  VG      GN        ++S  FK  L ++   L+  F+  G    ++  P +
Sbjct:  774 LLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEGVPVGSSANLQGN------STTNSTGFKIMLSKLYPKLLEAFSEIGVDCVQEIGPES 907          
BLAST of CN184964 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = -2
Query:  297 LVSIQALILNAKPFFNEPGSEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNGSTGCEQF 704
            LVS+Q L+LN+KP+FNE G +K     EGEK S  YN++ F+ + KTMMY +RKPPK FE+L+  HFR   + IL AC AYM G ++G +       +      S+S  FK  L ++   L +  +  G+  C +F
Sbjct:  962 LVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDAYMKGYLIGSLTKDASVIDERSSANSTSVGFKLMLAKIAPKLFSALSEVGA-DCNEF 1096          
The following BLAST results are available for this feature:
BLAST of CN184964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBC26_ARATH1.446e-2644.96Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC25_ARATH3.562e-2545.59Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC24_ARATH1.267e-2242.86Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
UBC23_ARATH1.829e-2141.18Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184964 ID=CN184964; Name=CN184964; organism=Citrus sinensis; type=EST; length=705bp
GGAGCTATCATTTTCATTTGAAATTAGAGTCAACAAGAAGCTTCAGTTCT
GGAGAGAACTCGATAATTTCAGAGTCACTCTACCATATCTAAACCTAGCT
AAAAGCCCAAAAACATCATATATACAGATAATATAAGCTTAGGTGAATTG
GGGTACCAGTTCAAACAATTTTACCAAAATTCATGAACTTGAGAGTTATT
GAAACACTTTTTTCATGACAACCAAAGCTTTGGGTCAACTGCCCCATTAT
GCTGTGAGCTTCTCTTCTATGCAGATGGTTATCAGGTTGAAGGCAGAAAC
TGTTCACAACCTGTTGATCCATTCCTGGTGAAGTTATTGACGAGGATTTT
CATCATTTGACCTAATTTGTCCTTAAACTCCTTTGAGCTGCTCCACTTGA
CTTGATCAACTTCTGGGTTCCCGTTTTTAATGTTGACGTGCCCTACCACA
GCACCATCCATATAAGCTTTACAAGCTACCAGAATATCATGAGCATGGTT
GCGAAAATGCATGGCAACCAAGTCTTCAAAGTGCTTTGGTGGTTTTCTTA
GTGTATACATCATTGTCTTCAACGAGTAGATAAATGCATCGTCATTGTAA
CTTCTGGACATCTTCTCCCCTTCAGGCCCCACATACGACTTTTCAGACCC
AGGCTCATTAAAGAACGGTTTTGCATTCAGAATTAAAGCTTGTATGGAAA
CCAAA
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