CN184963

Overview
NameCN184963
Unique NameCN184963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.282e-39
Identity = 76/157 (48.41%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  320 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNG 790
            K+CLSLLGTW G + E W  N+STMLQ+LVSIQALILN KP+FNEPG+ +S     GE  S+ Y+++ F+ SLKTM+Y++R+PP+HFE+ V  H+   +HDI+ AC AY  GA +G + +K G  ++++ + S SK+FK  +   M+ +V+ F + G
Sbjct:  355 KVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAYKAGAPLGSM-VKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLG 510          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.185e-38
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = -2
Query:  305 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQ-VKWSSSKEFKDKLGQMMK-ILVNNFTRNGSTGCE 790
            K+CLSLLGTW+G   E W  N STMLQVLVSIQ LILN KP+FNEPG+E+S     GE  S++Y+++ FI SLKTM+YT+R+PPK+FED    HF + AHD+L AC AY +GA  G+  +  G P+V++     SS +F+  +   ++ +L+  F   G  G E
Sbjct:  416 KVCLSLLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNGATPGY--LVKGAPDVEENSAGMSSLKFRTDVATFVETVLLKEFILLGVLGLE 577          

HSP 2 Score: 21.9422 bits (45), Expect = 5.185e-38
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -3
Query:  787 LNPNLYDCEK 816
            +NPNLY+C K
Sbjct:  407 INPNLYNCGK 416          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.054e-34
Identity = 73/164 (44.51%), Postives = 103/164 (62.80%), Query Frame = -2
Query:  299 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNGSTGCEQF 790
            K+CLSLL TWTG+  E+WD   S++LQVLVS+Q L+LN+KP+FNE G++K     EGEK S  YN++ F+ + KTMMY +RKPPK FE+L+  HFR   + IL AC AYM G ++G +       +      S+S  FK  L ++   L +  +  G+  C +F
Sbjct:  934 KVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDAYMKGYLIGSLTKDASVIDERSSANSTSVGFKLMLAKIAPKLFSALSEVGA-DCNEF 1096          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 74/168 (44.05%), Postives = 105/168 (62.50%), Query Frame = -2
Query:  287 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNGSTGCEQFLPST 790
            ++CLSLL TW+G  TE+W+   S++LQ+L+S QAL+LN KP+FNE G++K     EGEK S SYN++AF+ + K+M+  LRKPPKHFE LV  HF + A  +L ACKAYM+G  VG      GN        ++S  FK  L ++   L+  F+  G    ++  P +
Sbjct:  746 RVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEGVPVGSSANLQGN------STTNSTGFKIMLSKLYPKLLEAFSEIGVDCVQEIGPES 907          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBE2O_MOUSE (Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  506 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHF 790
            K+C+SLLGTW GK TE W  +KS++LQVL+SIQ LIL  +P++NE GF+      EG + SR YN+ A I  +++M   +R+PP+ FE  +  HF
Sbjct: 1035 KVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1128          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBE2O_HUMAN (Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.428e-18
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  506 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHF 790
            K+C+SLLGTW GK TE W  +KS++LQVL+SIQ LIL  +P++NE GF+      EG + SR YN+ A I  +++M   +R+PP+ FE  +  HF
Sbjct: 1038 KVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1131          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: UBC3_MIMIV (Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  452 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK-TMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMDGA 790
            K+CLS+LGTW G++ E W    S+MLQV++SIQ+L+L ++P+FNEPG+E S    +G K+S  YN       +K  M+  ++ P   FE ++  HF   A  I   C+ +++ A
Sbjct: 1304 KVCLSILGTWRGQAGESWIPGVSSMLQVMISIQSLVLISEPYFNEPGYESSRGTDKGNKLSTEYNQKVRFNCMKWAMIDVIKNPVPGFESMIKKHFSIKAPHIKQVCQTWINEA 1417          
BLAST of CN184963 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  461 KICLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK-TMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYM 790
            K+CLS+L TW G+  E W+   S+ LQVLVS+Q+LIL A+P+FNEPG+E+S   P G + SR Y+ +    ++K  M+  +R P   F++++  HF     +I+  C+ ++
Sbjct: 4636 KVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 4746          
The following BLAST results are available for this feature:
BLAST of CN184963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UBC26_ARATH7.282e-3948.41Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC25_ARATH5.185e-3849.39Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC23_ARATH7.054e-3444.51Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
UBC24_ARATH1.203e-3344.05Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
UBE2O_MOUSE1.428e-1848.42Ubiquitin-conjugating enzyme E2 O OS=Mus musculus ... [more]
UBE2O_HUMAN1.428e-1848.42Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens ... [more]
UBC3_MIMIV1.865e-1839.47Probable ubiquitin-conjugating enzyme E2 R521 OS=A... [more]
BIRC6_HUMAN5.426e-1839.64Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184963 ID=CN184963; Name=CN184963; organism=Citrus sinensis; type=EST; length=818bp
GAGGAGCTATCATTTTCATTTGAAATTAGAGTCAACAAGAAGCTTCAGTT
CTGGAGAGAACTCGATAATTTCAGAGTCACTCTACCATATCTAAACCTAG
CTAAAAGCCCAAAAACATCATATATACAGATAATATAAGCTTAGGTGAAT
TGGGGTACCAGTTCAAACAATTTTACCAAAATTCATGAACTTGAGAGTTA
TTGAAACACTTTTTTCATGACAACCAAAGCTTTGGGTCAACTGCCCCATT
ATGCTGTGAGCTTCTCTTCTATGCAGATGGTTATCAGGTTGAAGGCAGAA
ACTGTTCACAACCTGTTGATCCATTCCTGGTGAAGTTATTGACGAGGATT
TTCATCATTTGACCTAATTTGTCCTTAAACTCCTTTGAGCTGCTCCACTT
GACTTGATCAACTTCTGGGTTCCCGTTTTTAATGTTGACGTGCCCTACCA
CAGCACCATCCATATAAGCTTTACAAGCTACCAGAATATCATGAGCATGG
TTGCGAAAATGCATGGCAACCAAGTCTTCAAAGTGCTTTGGTGGTTTTCT
TAGTGTATACATCATTGTCTTCAACGAGTAGATAAATGCATCGTCATTGT
AACTTCTGGACATCTTCTCCCCTTCAGGCCCAACATACGACTTTTCAAAC
CCAGGCTCATTAAAGAACGGTTTTGCATTCAGAATTAAAGCTTGTATGGA
AACCAAAACCTGCAGCATGGTAGACTTATTTTTATCCCACATCTCAGTTG
ATTTACCGGTCCAGGTACCCAAAAGGCTGAGGCAGATTTTTCACAATCAT
ACAAATTTGGATTTAATC
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