CN184952

Overview
NameCN184952
Unique NameCN184952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:50..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.548e-52
Identity = 95/175 (54.29%), Postives = 119/175 (68.00%), Query Frame = 3
Query:   96 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG G  C  +  G      +L  +ISR  F+ +L + ND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF   T HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GVDLLN P L+ATD V+SFKSA+WF
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWF 230          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.758e-52
Identity = 96/177 (54.24%), Postives = 123/177 (69.49%), Query Frame = 3
Query:   96 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG+    CG       +  G++G++I+R MF D+L + N+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF A T HETTGGW  AP G YAWGYCY+R Q SP +              +YYGRGPIQ+++N NY + G+A+GVDL+NNP L+ATD V+SFK+A WF
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWF 220          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.758e-52
Identity = 100/178 (56.18%), Postives = 122/178 (68.54%), Query Frame = 3
Query:   96 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG G  C  +  G  T   GG+LG IIS  MF+ +L + ND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFA T HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GVDLLNNP L+ATDPV+SFKSA+WF
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWF 230          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 96/180 (53.33%), Postives = 120/180 (66.67%), Query Frame = 3
Query:   96 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CGS     G  C  +  G      +L  +ISR  F+ +L + ND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF   T HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GVDLLN P L+ATD V+SFKSA+WF
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWF 229          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 3
Query:  150 GELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            G+L  IISR  F+D+L + ND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF  T HETTGGW  AP G Y+WGYC+ ++ +P+S+            G+ YYGRGP+QL+WN NY +CG A+G DLLNNP L++ DPV++FK+AIWF
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWF 226          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 94/159 (59.12%), Postives = 115/159 (72.33%), Query Frame = 3
Query:  147 GGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            GG+LG IIS  MF+ +L + ND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFA T HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GVDLLNNP L+ATDPV+SFKSA+WF
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWF 235          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 97/171 (56.73%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  114 CGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTG--GWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            C  + +G G D G L  +I+RE F+ +L + ND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF A T HETTG  GW  AP G Y WGYCY R+++PA               QY+GRGP+QLTWN NY +CG A+GVDLLNNP LLATDP +SFKSA WF
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWF 227          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 8.577e-51
Identity = 91/158 (57.59%), Postives = 115/158 (72.78%), Query Frame = 3
Query:  150 GELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            G+L  IIS   F+D+L + NDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF  T HETTGGW  AP G Y+WGYC+ ++ +PAS             G +YYGRGP+QL+WN NY  CG A+GVDLLNNP L+A D V++FK+AIWF
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWF 241          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 92/179 (51.40%), Postives = 122/179 (68.16%), Query Frame = 3
Query:   84 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            +++ CG G  C  + +G  + GG L  +IS + F ++L + ND  C  + FYTYDAF+ AA+AFP F N G+   +KREIAAF   T HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GVDLLNNP L+ATDPV+SFK+A+WF
Sbjct:   47 TSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWF 222          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.496e-50
Identity = 97/167 (58.08%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  129 TGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTG--GWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            +G     G L  +ISRE F  +L + ND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF A T HETTG  GW  AP G YAWGYCY R+++P SS           PG QY+GRGP+QL+WN NY +CG A+GVDLLNNP LL++DP +SFKSA WF
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWF 208          
The following BLAST results are available for this feature:
BLAST of CN184952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_PHAVU4.548e-5254.29Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI7.758e-5254.24Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_TOBAC7.758e-5256.18Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI5_PHAVU1.323e-5153.33Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_BRANA1.323e-5157.59Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC1.323e-5159.12Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC1.323e-5156.73Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_ARATH8.577e-5157.59Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_PEA1.120e-5051.40Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI2.496e-5058.08Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184952 ID=CN184952; Name=CN184952; organism=Citrus sinensis; type=EST; length=622bp
GAGGCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATT
TTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGG
AAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCG
GTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCG
TATACAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGC
TTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATG
AAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCATACTGGCCAT
GAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGG
ATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATC
CTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGT
GGACTTGTTGAACAATCCATACCTACTTGCCACTGATCCAGTACTATCAT
TCAAGTCAGCAATCTGGTTCTG
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