DC887588

Overview
NameDC887588
Unique NameDC887588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:153..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.809e-43
Identity = 89/131 (67.94%), Postives = 97/131 (74.05%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPA---TQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NGIPLPNVT KIL+KV+EYCK+HVE      T                  +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP        ENQWAFE
Sbjct:   41 NGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.394e-42
Identity = 86/128 (67.19%), Postives = 97/128 (75.78%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NG+PLPNVT KILAKV+EYCK+HVE  A++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP        ENQWAFE
Sbjct:   40 NGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.929e-37
Identity = 78/128 (60.94%), Postives = 91/128 (71.09%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NGIPLPNVTG ILAKV+EYCKKHVE  A                    ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP        EN+WAFE
Sbjct:   42 NGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NGIPLPNVTG ILAKV+EYCKKHVE  A                     +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP        EN+WAFE
Sbjct:   42 NGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTE------NHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.273e-35
Identity = 77/128 (60.16%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            +GIPL NV  KIL KV+EYCKKH    A                   EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:   40 DGIPLANVESKILVKVIEYCKKHHVDEANP---------------ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 76/129 (58.91%), Postives = 86/129 (66.67%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKK-HVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            +GIPL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:   40 DGIPLANVESKILVKVIEYCKKYHVD----------------EANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 71/128 (55.47%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NGIPLPNVTGKILA V+EYC KH  V A                   ++DLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP        EN+WAFE
Sbjct:   41 NGIPLPNVTGKILAMVIEYCNKH-HVDAANPCS--------------DDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of DC887588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH2.809e-4367.94SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.394e-4267.19SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH3.929e-3760.94SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.651e-3558.59SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH6.273e-3560.16SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH9.058e-3458.91SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH6.492e-3255.47SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_XENLA1.224e-3053.97S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT1.224e-3053.97S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB1.224e-3053.97S-phase kinase-associated protein 1 OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionDC887588 EIC Citrus sinensis cDNA clone EIC0597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887588 ID=DC887588; Name=DC887588; organism=Citrus sinensis; type=EST; length=601bp
TCCACGGTCTTGATAGCAAGCAGGAAAGGATGGACCAGACCAACTGCTAC
CAGTTCCACCAGAACAGACTATTATTTACATTTCAAACAGCTAATAAGTT
CGAAAGTACAATGAGAAAGGAAAAGATAAGCCCTAGAAAACTACATCTAC
ATGTTAAAGACAGCAAGATTGCAAGACAATGATAATGAAAAATTGTCTTT
GTTGAAACAACTTTCACTCAAAAGCCCACTGGTTCTCCCTACGGACCTCT
TCTTCCTCCTCTGGAGTGAAGTCATTCTTGATGTTAAAGGTCTTTCGAAT
CTCCTCCGGAGTCTTTCCCTTGATCATGTCAGCAACAGTCTGGCAGGTAA
GGTCCAGCAGCCCCTTGATGTTCAGGTAGTTTGCTGCCAGGATGAGATCG
AAGAGAGTGGCCTGGTCAACTTTGACGAAGTCAGTGTCCCAGCTTTTGAG
ATCCTCCTCACCACCGTTAGTGGCAGTACCGTTGCTGTTGGCGCCGCTGT
TGTTGCTATCCTGGGTCGCAGGAACCTCCACGTGTTTCTTGCAATACTCA
ACCACCTTCGCCAGGATCTTGCCCGTCACGTTCGGTAACGGGATGCCGTT
A
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