CN184949

Overview
NameCN184949
Unique NameCN184949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184949_ssr50 microsatellite CN184949_ssr50:50..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: RN217_XENLA (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 59/207 (28.50%), Postives = 93/207 (44.93%), Query Frame = 3
Query:   84 TCEIFIEPVAANKKFKNKNLCTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHNLDTISCIPIIPASFFSKWCDVLCEDYVLGFERCYCPNSNC-----------KALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNSRDRSDIMFCQLVE--RMNWARCPGCGHCVERVNGCSSVLC-RCKTRFCYRCGRK 662
            +C + +E    ++  K    C  P C EC+ +Y+  +VQ    A+I+CP   C  +LD  + +  +P        D++   Y L   R       C           K  + N  ++   L K QCPSC+  +CF+C   WH G  C E +   D+    +   +E  + N  +CP C   ++R  GC  + C +C T FCYRCG +
Sbjct:    2 SCRVCLE----DRSIKPLPCCKKPVCDECLKRYLSSQVQLGQ-AEIQCPITECNKHLDESTILYSLPHD------DIIKYKYFLELSRMDSSTKPCPQCKHFTTFKRKTHIPNPTKSENKL-KIQCPSCQFIWCFRCHAPWHEGVNCREYKKG-DKLLRHWANEIEHGQRNAQKCPRCKVHIQRTEGCDHMTCSQCNTNFCYRCGER 195          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144A_XENTR (Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYC--KHNLDTISCIPIIPASFFSKWCDVLCE-DYVLGFERCYCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNSR---DRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRC 653
            C   FC  C+ +Y+++ +++     I CP   C  + +L       ++ A    K+  +  E + +L   R +CP+S+C+A+   + +        QC +C   FC  CK  WH G  C E+         S   F  L + +   RCP C   +ER  GC+ ++C+ CK  FC+ C
Sbjct:   38 CQCIFCTLCLKQYVELLIKEGLETAISCPDASCPKRGHLQENEIECMVAAEIMQKYKKLQFEKEILLDPCRTWCPSSSCQAVCKLQEKGIQNPQLVQCSACDIEFCSACKANWHPGQGCPENMAITFLPGDSSSFFKSLEDDVPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144A_HUMAN (Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 50/180 (27.78%), Postives = 80/180 (44.44%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHN----LDTISCIPIIPASFFSKWCDVLCEDYVLGFERC--YCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNSR---DRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRC 653
            C   FC  C+ +Y+++ +++     I CP   C        + I C+  + A    ++  +  E  VL F+ C  +CP S C+A+   +     T    QC +C+  FC  CK  WH G  C E+         +   F    +     RCP C   +ER  GC+ ++C+ CK  FC+ C
Sbjct:   38 CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM--VAAEIMQRYKKLQFEREVL-FDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144B_MOUSE (E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 46/178 (25.84%), Postives = 82/178 (46.07%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHN--LDTISCIPIIPASFFSKWCDVLCEDYV-LGFERCYCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNSRDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRCGRKL 665
            C   FC  C+ +Y+ + +++   + I CP + C ++  L       ++P   F  +  +  E  V +   R +CP ++C+ +        G     +CPSC   FC  CK  WH    C +S+++      +F    +     +CP C   +ER  GC+ ++C+ CK  FC+ C + L
Sbjct:   48 CQCIFCTPCLKQYMVLSIREGCGSPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTWCPVADCQTVCHISAGDPGQPVLVECPSCHLKFCSCCKDAWHEESSCRDSQSAMPEHGALFGTDAD-APIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYCLQNL 224          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144B_BOVIN (E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 48/181 (26.52%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHN--LDTISCIPIIPASFFSKWCDVLCEDYV-LGFERCYCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNS---RDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRCGRKL 665
            C   FC  C+ +Y+Q+ +++   + I CP + C ++  L       ++P   F  +  +  E  V L   R +CP ++C+ +        G     +CPSC   FC  CK  WHA   C +S+      +   +   +    +   +CP C   +ER  GC+ ++C+ CK  FC+ C + L
Sbjct:   49 CRCIFCTACLKQYMQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPCRTWCPVADCQTVCPVATSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPGILPTEHGTLFGTETDAPIK--QCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNL 227          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144B_HUMAN (E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 50/180 (27.78%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHN--LDTISCIPIIPASFFSKWCDVLCEDYV-LGFERCYCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRN--SRDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRCGRKL 665
            C   FC  C+ +Y+Q+ +++   + I CP + C ++  L       ++P   F  +  +  E  V L   R +CP ++C+ +        G     +CPSC   FC  CK  WHA   C +S+          +F    E     +CP C   +ER  GC+ ++C+ CK  FC+ C + L
Sbjct:   48 CQCIFCTACLKQYMQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRALFGTDAE-APIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNL 226          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: R144A_MOUSE (Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus GN=Rnf144a PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 50/180 (27.78%), Postives = 79/180 (43.89%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHN----LDTISCIPIIPASFFSKWCDVLCEDYVLGFERC--YCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRNSR---DRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLCR-CKTRFCYRC 653
            C   FC  C+ +Y+++ +++     I CP   C        + I C+  + A    ++  +  E  VL F+ C  +CP S C+A+   +     T    QC +C   FC  CK +WH G  C E+         +   F          RCP C   +ER  GC+ ++C+ CK  FC+ C
Sbjct:   38 CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM--VAAEIMQRYKKLQFEREVL-FDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKACDMEFCSACKARWHPGQGCPETMPITFLPGETSSAFKMEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: ARI2_MOUSE (Protein ariadne-2 homolog OS=Mus musculus GN=Arih2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.574e-13
Identity = 49/176 (27.84%), Postives = 76/176 (43.18%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHNLDTISCIPIIP-ASFFSKWCDVLCEDYVLG-FERCYCPNSNCKALV-VNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRN--SRDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLC-RCKTRFCYRC 653
            C H FC+ C  ++  V V+D     I C    C          P++P      K+   L  DYV   F+   CP ++C  ++ V E        + QC  C + FCF+C+  +HA   C   R   ++   D      +   +   CP C  C+E+  GC+ + C +CK  FC+ C
Sbjct:  155 CQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYRRYLFRDYVESHFQLQLCPGADCPMVIRVQEPRAR----RVQCNRCSEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYIS-AHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMC 325          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: ARI2_HUMAN (Protein ariadne-2 homolog OS=Homo sapiens GN=ARIH2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.488e-13
Identity = 47/176 (26.70%), Postives = 76/176 (43.18%), Query Frame = 3
Query:  144 CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHNLDTISCIPIIP-ASFFSKWCDVLCEDYVLG-FERCYCPNSNCKALV-VNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRN--SRDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLC-RCKTRFCYRC 653
            C H FC+ C  ++  V V+D     + C    C          P++P      K+   L  DYV   ++   CP ++C  ++ V E        + QC  C + FCF+C+  +HA   C   R   ++   D      +   +   CP C  C+E+  GC+ + C +CK  FC+ C
Sbjct:  156 CQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQEPRAR----RVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYIS-AHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMC 326          
BLAST of CN184949 vs. ExPASy Swiss-Prot
Match: ARI2_DROME (Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.277e-12
Identity = 48/191 (25.13%), Postives = 85/191 (44.50%), Query Frame = 3
Query:  105 PVAANKKFKNKNL---CTHPFCQECIAKYIQVKVQDDNTAKIECPGLYCKHNLDTISCIPIIPASFF-SKWCDVLCEDYVLGF-ERCYCPNSNCKALVVNECETNGTLTKAQCPSCKQWFCFQCKLKWHAGYRCEESRN--SRDRSDIMFCQLVERMNWARCPGCGHCVERVNGCSSVLC-RCKTRFCYRC 653
            PV A+ +  +K     C H FC++C   Y + ++    + +I C    C   +     + ++       K+     +DYV    E  +CP  NC+ ++V   E +    +A C +C   FCF+C + +HA   C+  +   ++   D      +   +   CP C  C+E+  GC+ + C  CK  FC+ C
Sbjct:  154 PVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQ-IIVQSSEISAK--RAICKACHTGFCFRCGMDYHAPTDCQVIKKWLTKCADDSETANYIS-AHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWMC 340          
The following BLAST results are available for this feature:
BLAST of CN184949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RN217_XENLA9.132e-1928.50Probable E3 ubiquitin-protein ligase RNF217 OS=Xen... [more]
R144A_XENTR6.125e-1527.68Probable E3 ubiquitin-protein ligase RNF144A OS=Xe... [more]
R144A_HUMAN1.365e-1427.78Probable E3 ubiquitin-protein ligase RNF144A OS=Ho... [more]
R144B_MOUSE6.772e-1425.84E3 ubiquitin-protein ligase RNF144B OS=Mus musculu... [more]
R144B_BOVIN6.772e-1426.52E3 ubiquitin-protein ligase RNF144B OS=Bos taurus ... [more]
R144B_HUMAN8.845e-1427.78E3 ubiquitin-protein ligase RNF144B OS=Homo sapien... [more]
R144A_MOUSE1.155e-1327.78Probable E3 ubiquitin-protein ligase RNF144A OS=Mu... [more]
ARI2_MOUSE2.574e-1327.84Protein ariadne-2 homolog OS=Mus musculus GN=Arih2... [more]
ARI2_HUMAN7.488e-1326.70Protein ariadne-2 homolog OS=Homo sapiens GN=ARIH2... [more]
ARI2_DROME1.277e-1225.13Protein ariadne-2 OS=Drosophila melanogaster GN=ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184949 ID=CN184949; Name=CN184949; organism=Citrus sinensis; type=EST; length=868bp
GAGGAAACACTCTGCAAAAGCCAAATGAAAGCCTAGAAAAGAAAGAAGGA
GAAGAAGAAGAAGAAGGCAATGGAAGCAGCTTCACTTGTGAGATTTTCAT
AGAACCAGTGGCAGCAAACAAGAAGTTCAAGAACAAAAACCTCTGTACTC
ACCCTTTCTGTCAAGAATGCATAGCTAAATACATCCAAGTGAAGGTCCAA
GACGACAACACAGCCAAGATTGAATGCCCTGGATTATACTGTAAGCATAA
TTTAGACACAATTTCTTGCATACCCATAATCCCGGCGAGTTTCTTTTCAA
AATGGTGTGATGTTCTCTGTGAGGATTATGTTCTAGGGTTTGAGAGATGC
TACTGCCCCAACTCAAATTGCAAGGCTTTGGTGGTAAATGAGTGTGAGAC
GAATGGAACGTTGACGAAAGCTCAGTGCCCCAGCTGTAAGCAATGGTTCT
GTTTCCAGTGCAAGTTGAAATGGCACGCTGGGTACCGATGTGAAGAAAGT
AGAAACTCGCGGGATCGCAGTGATATTATGTTTTGCCAGCTTGTGGAGAG
GATGAATTGGGCTAGGTGTCCTGGTTGCGGCCACTGTGTTGAACGAGTGA
ACGGATGTTCTTCTGTCCTGTGCAGATGTAAGACTAGATTTTGCTATAGA
TGTGGGAGAAAGCTTCCGATTGGATGTTCTTGCCAAAGAGGATCTTCATA
TGACTGCAGGATAACAATTTTAATCATTGTAGGGACTGTAGTAGGTCTTG
TAGGGATGATATTACTGGGTAAGTATGGAAAAGAAGATGATATTACTGGG
TAGACAGCATAACAAGACTCATCCAGATCAAAGCGGAGCTTCTTATTGTT
GCAATCATTACGGTACTT
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