CN184937

Overview
NameCN184937
Unique NameCN184937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2455 contig Csv1_Contig2455:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_NEMVE (RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.600e-60
Identity = 109/176 (61.93%), Postives = 146/176 (82.95%), Query Frame = 3
Query:  198 KPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +P F P+KA +++GG+ + RK+ V  HRY+PLK+ WM+I+TP+ E +K+ IR NL +R VE++   +T DI  +QK ADFV AF+LGF+V DA+AL+RLD+L++ESFEI DVK L+G+HLSRAIGR++GKGGKTKF IEN TKTRIV+A++KIHILGSF NIKIAR ++C+LILGS
Sbjct:   43 RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHVEIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGS 218          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_DROME (RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.079e-60
Identity = 110/161 (68.32%), Postives = 140/161 (86.96%), Query Frame = 3
Query:  243 RVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            R + RKV+V PHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQ+ ADFV AF+ GF+V DA+ALLRL++L++ESFEIKDVKTLRG+H SRAIGRL+GKGG+TKF IEN TKTRIV+ADSKIHILGS+ NI++AR ++C+LILGS
Sbjct:   60 RSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGS 220          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_DROPS (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 109/159 (68.55%), Postives = 139/159 (87.42%), Query Frame = 3
Query:  249 QFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            + RKV+V PHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK ADFV AF+ GF+V DA+ALLRL++L++E+FEIKDVKTLRG+H SRAIGRL+GKGG+TKF IEN TKTRIV+ADSKIHILGS+ NI++AR ++C+LILGS
Sbjct:   60 ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKGADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGS 218          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_XENLA (RNA-binding protein PNO1 OS=Xenopus laevis GN=pno1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.147e-59
Identity = 109/184 (59.24%), Postives = 145/184 (78.80%), Query Frame = 3
Query:  177 ESGSLPPK-PLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            + G  P K P F P+   ++ G + + RK+ V  HRY+PLK+ WM+I+TPI E +++ +R NLK+R VE+KT  +T D+  L K ADFV AF+LGF V DA+AL+RLD+L++ESFE+ DVK L+G+HLSRAIGR++GKGGKTKF IEN TKTRIV+ADSKIHI+GSF NIK+AR ++C+LILGS
Sbjct:   33 DMGEQPSKRPDFPPISGDKLMGDKDEMRKIPVPSHRYTPLKENWMKIFTPIVEHLQLQVRFNLKSRNVEIKTCKETTDVGALTKAADFVRAFILGFQVEDALALVRLDDLFLESFEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADSKIHIMGSFQNIKMARTAICNLILGS 216          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_CHICK (RNA-binding protein PNO1 OS=Gallus gallus GN=PNO1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.147e-59
Identity = 113/183 (61.75%), Postives = 146/183 (79.78%), Query Frame = 3
Query:  180 SGSLPPK-PLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +G  P K P F PL A  +  G+ + RKV V  +RY+PLK+ WM+I+TPI E +++ IR NLK R VE+KT ++T D+S L K ADFV AF+LGF V DA+AL+RLD+L++ESFE+ DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+ADSKIHILGSF NIK+AR ++C+LILGS
Sbjct:   40 AGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEHLQLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMARTAICNLILGS 222          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_DANRE (RNA-binding protein PNO1 OS=Danio rerio GN=pno1 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.722e-59
Identity = 111/189 (58.73%), Postives = 147/189 (77.78%), Query Frame = 3
Query:  162 SQLQNESGSLPPK-PLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +Q +  S S P K P F  L   ++ GG  + RKV V  HRY+PLK+ W++I+TPI E +++ +R NLK R+VE+KT  +T DI  L + ADFV AF+LGF V DA+AL+RLDEL++E+F++ DVK L+G+HLSRAIGR++GKGGKTKF IEN TKTRIV+AD+KIHILGSF NIK+AR ++C+LILGS
Sbjct:   44 TQTEESSSSAPVKRPHFPALSGDQLGGGVDEMRKVPVPSHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRQVEIKTCKETQDIGALTRAADFVKAFVLGFQVEDALALIRLDELFLETFDVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGS 232          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_XENTR (RNA-binding protein PNO1 OS=Xenopus tropicalis GN=pno1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.147e-58
Identity = 109/184 (59.24%), Postives = 144/184 (78.26%), Query Frame = 3
Query:  177 ESGSLPPK-PLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            ++G  P K P F P+   ++ G + + RKV V  HRY+PLK+ WM+I+TPI E +++ +R NLK R VE+KT  +T D+  L K  DFV AF+LGF V DA+AL+RLD+L++ESFE+ DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+ADSKIHILGSF NIK+AR ++C+LILGS
Sbjct:   33 DTGEQPSKRPDFPPISGDKLMGDKDEMRKVPVPSHRYTPLKENWMKIFTPIVEHLQLQVRFNLKTRNVEIKTCKETTDVGALTKATDFVRAFILGFQVEDALALVRLDDLFLESFEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMARTAICNLILGS 216          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_RAT (RNA-binding protein PNO1 OS=Rattus norvegicus GN=Pno1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.690e-58
Identity = 107/187 (57.22%), Postives = 145/187 (77.54%), Query Frame = 3
Query:  165 QLQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            ++  E      +P+F PL   ++  G+ + RK+ V  +RY+PLK+ WM+I+TPI E + + IR NLK+R VE++T  DT D+S L K ADFV AF+LGF V DA+AL+RLD+L++ESFEI DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+AD K+HILGSF NIK+AR ++C+LILG+
Sbjct:   42 RMDTEEARPAKRPVFPPLSGDQLLTGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKDTKDVSALTKAADFVKAFVLGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGN 228          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_CANAL (Pre-rRNA-processing protein PNO1 OS=Candida albicans GN=PNO1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.268e-57
Identity = 119/192 (61.98%), Postives = 146/192 (76.04%), Query Frame = 3
Query:  150 ETVPSQLQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            ET   QL +ESG    KP F       M   +++ RKV V PHR +PLK +W +IY P+ E +K+ +RMNLK + VEL+T   T D+  LQK ADFV AF LGFDV DAIALLRLD+LYIE+FEIKDVKTL G+HLSRAIGR++GK GKTKFAIENAT+TRIV+ADSKIHILG F +I++AR+++ SLILGS
Sbjct:   71 ETTELQL-DESG----KPKFSAASKSNMKV-KLESRKVAVPPHRMTPLKNVWSKIYPPLVEHLKLQVRMNLKTKTVELRTNKYTTDVGALQKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLTGDHLSRAIGRIAGKDGKTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAVVSLILGS 256          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_ORYLA (RNA-binding protein PNO1 OS=Oryzias latipes GN=pno1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.824e-57
Identity = 107/176 (60.80%), Postives = 142/176 (80.68%), Query Frame = 3
Query:  198 KPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +P F P+ A ++ G   + RKV V  HRY+PLK+ W++I+TPI E +++ +R NLK R VE+KT  +T DI+ L K ADF+ AF+LGF V DA+AL+RLDEL++ESF++ DVK L+G+HLSRAIGR++GKGGKTKF IEN TKTRIV+AD+KIHILGSF NIK+AR ++C+LILGS
Sbjct:   49 RPHFPPISADKLRGPD-EMRKVAVPAHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRNVEIKTCKETQDIAALTKAADFIKAFVLGFQVDDAMALIRLDELFLESFDVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGS 223          
The following BLAST results are available for this feature:
BLAST of CN184937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PNO1_NEMVE1.600e-6061.93RNA-binding protein pno1 OS=Nematostella vectensis... [more]
PNO1_DROME6.079e-6068.32RNA-binding protein pno1 OS=Drosophila melanogaste... [more]
PNO1_DROPS1.354e-5968.55RNA-binding protein pno1 OS=Drosophila pseudoobscu... [more]
PNO1_XENLA5.147e-5959.24RNA-binding protein PNO1 OS=Xenopus laevis GN=pno1... [more]
PNO1_CHICK5.147e-5961.75RNA-binding protein PNO1 OS=Gallus gallus GN=PNO1 ... [more]
PNO1_DANRE6.722e-5958.73RNA-binding protein PNO1 OS=Danio rerio GN=pno1 PE... [more]
PNO1_XENTR1.147e-5859.24RNA-binding protein PNO1 OS=Xenopus tropicalis GN=... [more]
PNO1_RAT5.690e-5857.22RNA-binding protein PNO1 OS=Rattus norvegicus GN=P... [more]
PNO1_CANAL1.268e-5761.98Pre-rRNA-processing protein PNO1 OS=Candida albica... [more]
PNO1_ORYLA2.824e-5760.80RNA-binding protein PNO1 OS=Oryzias latipes GN=pno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184937 ID=CN184937; Name=CN184937; organism=Citrus sinensis; type=EST; length=727bp
CTATGTAGGATCCCCCCGGGCTGCAGGTTTTCTTCTCTTGAACCTCTCAT
CACAGTCACACTAAGCTCTAGCCGACATAGAGATCAGGGAGAGAAGACAG
CTCGTATCTGATCTTGTGGTTGTTCACAATGCAGACTTCCATGGACATTG
AAACAGTTCCATCTCAACTGCAAAATGAATCCGGGTCTCTGCCACCAAAG
CCCCTGTTTGGGCCATTGAAGGCTCATGAAATGTCTGGTGGTCGAGTTCA
GTTTCGGAAGGTCAATGTTACACCTCATCGGTACTCGCCTCTCAAGAAAA
TATGGATGGAAATATACACTCCAATTTATGAGCAGATGAAGATTGACATC
CGTATGAACCTCAAGGCTCGTAGGGTTGAATTGAAGACTAGAGCAGACAC
ACCCGACATAAGTAATCTACAGAAGTGTGCGGATTTTGTTCATGCATTCA
TGCTTGGTTTTGATGTTATCGATGCCATTGCACTTTTGCGTTTGGATGAG
CTGTATATAGAATCTTTTGAGATCAAGGATGTTAAGACACTAAGAGGTGA
GCATTTGTCACGTGCCATAGGAAGATTATCTGGTAAAGGTGGCAAAACAA
AGTTTGCTATCGAGAATGCCACAAAAACAAGGATTGTGATTGCAGATTCG
AAAATTCACATACTAGGATCCTTTGCCAATATTAAAATTGCAAGGGATTC
CCTTTGTAGTCTCATCTTAGGATCTCC
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