CN184935
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21 Identity = 48/88 (54.55%), Postives = 68/88 (77.27%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 R+ ++ ++ +L GG LK YQ+KG++W++SL+ N LNGILAD+MGLGKTIQTI+ L +L + + GPYLVI PLSTLSNW +E ++ Sbjct: 750 RIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAK 837
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.329e-21 Identity = 75/218 (34.40%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAAP----------------QCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQR----------ELV---PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 E+E SK +A KL+ LLTQT++Y+ F+ K++ + G E E AP Q + A+ A A+ TR+K D E+ E+ P + LK YQLKG+ WL +L+ G+NGILAD+MGLGKT+Q+I+ LAHL + + + GP+LV+ P STL NWVNEIS+ Sbjct: 586 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTSALEGNEVAEED----EDNYDLTTTAPNKNDFHAIDFDNENDEQLKLKAAQNASNALAETRAKAKAFDDAHRQQQSTESDDEEEMNFQNPTSLGEITIEQPKMLACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISK 792
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21 Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1 Query: 610 EQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 E+ E + GG LK YQLKG++W++SL+ N LNGILAD+MGLGKTIQTIAF+ +L + GP+L+I PLSTL+NW+ E + Sbjct: 856 EEVEQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEK 939
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21 Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 +L GGKLK YQL+G++W+ISL+ N LNGILAD+MGLGKTIQTI+ + HL + +GP+LVI PLSTL+NW E R Sbjct: 411 ILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFER 487
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 9.643e-21 Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1 Query: 628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 P GK++ YQL G+ WLI L++NG+NGILAD+MGLGKT+QTI+ LA+L + G++GP++V+AP STL NW+NEI R Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRR 259
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.259e-20 Identity = 75/218 (34.40%), Postives = 104/218 (47.71%), Query Frame = 1 Query: 298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAA---------------PQCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQREL--------------VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858 E+E SK +A KL+ LLTQT++Y+ F+ K++ + G S A Q R A+ A A+ TR+K ++E+ EL P + LK YQLKG+ WL +L+ G+NGILAD+MGLGKT+Q+I+ LAHL N + GP+LV+ P STL NWVNEIS+ Sbjct: 569 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTNELEGNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRAKAKQFDDHANAHEE---EEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISK 776
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.259e-20 Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1 Query: 628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 P L G LK YQ+KG++WL++ ++ GLNGILAD+MGLGKTIQ +AFLAHL + + GP+LV+AP S L+NW +EISR Sbjct: 579 PELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 656
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RVDK+ L+ G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L + ++GP+L+I PLSTLSNW E + Sbjct: 741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RVDK+ L+ G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L + ++GP+L+I PLSTLSNW E + Sbjct: 741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RVDK+ L+ G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L + ++GP+L+I PLSTLSNW E + Sbjct: 741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824 The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bpback to top |