CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21
Identity = 48/88 (54.55%), Postives = 68/88 (77.27%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            R+ ++ ++   +L GG LK YQ+KG++W++SL+ N LNGILAD+MGLGKTIQTI+ L +L +   + GPYLVI PLSTLSNW +E ++
Sbjct:  750 RIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAK 837          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.329e-21
Identity = 75/218 (34.40%), Postives = 106/218 (48.62%), Query Frame = 1
Query:  298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAAP----------------QCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQR----------ELV---PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            E+E  SK +A        KL+ LLTQT++Y+ F+  K++   + G E   E              AP                Q   + A+ A  A+  TR+K                D E+           E+    P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL + + + GP+LV+ P STL NWVNEIS+
Sbjct:  586 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTSALEGNEVAEED----EDNYDLTTTAPNKNDFHAIDFDNENDEQLKLKAAQNASNALAETRAKAKAFDDAHRQQQSTESDDEEEMNFQNPTSLGEITIEQPKMLACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISK 792          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  610 EQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            E+ E   +  GG LK YQLKG++W++SL+ N LNGILAD+MGLGKTIQTIAF+ +L +     GP+L+I PLSTL+NW+ E  +
Sbjct:  856 EEVEQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEK 939          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            +L GGKLK YQL+G++W+ISL+ N LNGILAD+MGLGKTIQTI+ + HL +    +GP+LVI PLSTL+NW  E  R
Sbjct:  411 ILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFER 487          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.643e-21
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P    GK++ YQL G+ WLI L++NG+NGILAD+MGLGKT+QTI+ LA+L +  G++GP++V+AP STL NW+NEI R
Sbjct:  182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRR 259          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.259e-20
Identity = 75/218 (34.40%), Postives = 104/218 (47.71%), Query Frame = 1
Query:  298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAA---------------PQCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQREL--------------VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            E+E  SK +A        KL+ LLTQT++Y+ F+  K++   + G    S              A                 Q   R A+ A  A+  TR+K                ++E+ EL               P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL  N  + GP+LV+ P STL NWVNEIS+
Sbjct:  569 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTNELEGNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRAKAKQFDDHANAHEE---EEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISK 776          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.259e-20
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L  G LK YQ+KG++WL++ ++ GLNGILAD+MGLGKTIQ +AFLAHL +   + GP+LV+AP S L+NW +EISR
Sbjct:  579 PELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 656          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RVDK+      L+  G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L +   ++GP+L+I PLSTLSNW  E  +
Sbjct:  741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RVDK+      L+  G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L +   ++GP+L+I PLSTLSNW  E  +
Sbjct:  741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RVDK+      L+  G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L +   ++GP+L+I PLSTLSNW  E  +
Sbjct:  741 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 824          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SNF2_YEAST2.538e-2154.55Transcription regulatory protein SNF2 OS=Saccharom... [more]
INO80_CANGA4.329e-2134.40Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
SNF22_SCHPO7.384e-2155.95SWI/SNF chromatin-remodeling complex subunit snf22... [more]
SNF21_SCHPO7.384e-2162.34Chromatin structure-remodeling complex subunit snf... [more]
ISW2_ARATH9.643e-2158.97Putative chromatin-remodeling complex ATPase chain... [more]
INO80_YEAST1.259e-2034.40Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_ARATH1.259e-2060.26DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
SMCA4_RAT1.645e-2055.68Transcription activator BRG1 OS=Rattus norvegicus ... [more]
SMCA4_MOUSE1.645e-2055.68Transcription activator BRG1 OS=Mus musculus GN=Sm... [more]
SMCA4_HUMAN1.645e-2055.68Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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