CN184934

Overview
NameCN184934
Unique NameCN184934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5777 contig Csv1_Contig5777:175..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184934 vs. ExPASy Swiss-Prot
Match: PIGS_MOUSE (GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 44/149 (29.53%), Postives = 85/149 (57.05%), Query Frame = -3
Query:  301 PSGKGFTEWELDVLSRQFACFNLHSCSTTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLSQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKAKYTAWKAKVKVE 747
            P  +G   WELD L    +  NL + +TTL SL++L+  +  ++I D++   V  ++ A + +    +LG   S+  +S +A + +E AFF PS++ + Y+  +  FAIY P FLP+++ +LL+ ++ ++  ++      +WK   K++
Sbjct:  413 PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKIFQETRK------SWKKPEKID 555          
BLAST of CN184934 vs. ExPASy Swiss-Prot
Match: PIGS_RAT (GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 44/149 (29.53%), Postives = 83/149 (55.70%), Query Frame = -3
Query:  301 PSGKGFTEWELDVLSRQFACFNLHSCSTTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLSQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALREWKRYKQEKAKYTAWKAKVKVE 747
            P  +G   WELD L    +  NL + +TTL SL++L+  +  ++I D++   V  ++ A + +    +LG   S+  +S +A + +E AFF PS++ + Y+  +  FAIY P FLP+++ +LL+ ++ +         + +WK   K++
Sbjct:  413 PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKIFLE------THKSWKKPEKID 555          
BLAST of CN184934 vs. ExPASy Swiss-Prot
Match: PIGS_HUMAN (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 42/127 (33.07%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  367 PSGKGFTEWELDVLSRQFACFNLHSCSTTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLSQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALR 747
            P+ +G   WELD L    +  NL + +TTL SL++L+  +  ++I D++   V  ++ A + S    + G   S+ V+S +A + +E AFF PS++ + Y+  +  FAIY P FLP+++ +LL+ ++
Sbjct:  413 PTSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVK 539          
BLAST of CN184934 vs. ExPASy Swiss-Prot
Match: PIGS_BOVIN (GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 41/127 (32.28%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  367 PSGKGFTEWELDVLSRQFACFNLHSCSTTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLSQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVSMHVLLAALR 747
            P  +G   WELD L    +  NL + +TTL SL++L+  +  ++I D++   V  ++ A + +    S G   S+  +S +A + +E AFF PS++ + Y+  +  FAIY P FLP+++ +LL+  +
Sbjct:  413 PKSEGIMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEELSSGHLASAFAASQEAVTSSERAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLFK 539          
The following BLAST results are available for this feature:
BLAST of CN184934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PIGS_MOUSE1.463e-1429.53GPI transamidase component PIG-S OS=Mus musculus G... [more]
PIGS_RAT4.257e-1429.53GPI transamidase component PIG-S OS=Rattus norvegi... [more]
PIGS_HUMAN5.559e-1433.07GPI transamidase component PIG-S OS=Homo sapiens G... [more]
PIGS_BOVIN1.617e-1332.28GPI transamidase component PIG-S OS=Bos taurus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184934 ID=CN184934; Name=CN184934; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTCGCTCATTGGTTGACAAGAATCCCACAGATACTCAGAACCAACC
ATATAGACCCACCATAATCTCAGTATTTCTACAATATGAATCTTCAAAAC
GCCTACCAACATCATTGATTGATGAGAAAATCATTCAAGTGTTATTGAGA
TTAAATGGAATAATGTTTGCTTCGCAGTATGAAGCTGTGGCGCACTACGC
AATGCCGGCTGAATTTACCATCTGATGCCTGCTGGCCTCTCTGCATTGTC
TCCCTCCTCTCTATTACTAGATGTTGCTCAGGTCAAGGTAATGATCAAGA
CTCTACCTTCACTTTGGCTTTCCACGCTGTGTATTTTGCTTTTTCTTGCT
TGTATCTCTTCCATTCTCTTAAAGCGGCAAGGAGGACATGCATCGAAACA
GGCAAAAAGAATGGCGAATAGATGGCAAAACAGTGCTCAAATGAGTAGTA
ACTGATGGACATGATAGACGGGTGAAAAAAGGCATCCTCTGCTAGGGATC
TTGCTTGTCCTGAAGACACTGCAGAAGATTCATTATCCCCTAAAGAGGCA
TTACTCTGGGACAATTTTGCTGCCTCAAGAGAAAACTGAACCAGTTTTCC
TATCTCATCCATGATAATCATCCTTGGCAGCGACTGCACCAATCTGGAAA
GGGAACCAAGTGTTGTGGAACATGAATGAAGATTAAAGCATGCGAACTGC
CGAGACAAAACATCCAGCTCCCATTCTGTGAAGCCTTTTCCACTAGGCAA
AAGGTGGTATGTGC
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