DC887580

Overview
NameDC887580
Unique NameDC887580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3410 contig Csv1_Contig3410:499..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQDDE-EVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            QTQAAEQFK P  N  +V  KPESS   Q+DE EVD+TGVEPKDIELVMTQAGV R++AVKALKAADGDIVSAIM+LT
Sbjct:  129 QTQAAEQFKAP--NLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLT 204          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESS--AMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q+QAAEQFK P  +  NV SK ESS  A+VQDDEEVDE GVEPKDIELVMTQAGV R  AVKALKAADGDIVSAIMELT
Sbjct:  126 QSQAAEQFKAP--DLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.097e-21
Identity = 60/84 (71.43%), Postives = 65/84 (77.38%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESS-----AMVQDD--EEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q+QAAEQFK P  N  NV S+ E+S     A VQDD  EEVDE GVEPKDIELVMTQAGV + RAVKALK A+GDIVSAIMELT
Sbjct:  122 QSQAAEQFKAP--NLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMV------QDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            QTQAA+QF++P    G  + + E+S         +D+EE+DETGVE +DI+LVMTQAGV RS+AVKALK+ DGDIVSAIMELT
Sbjct:  136 QTQAAQQFRMP--EIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = -3
Query:   93 QTQAAEQFKVPP-----PNTGNVASKPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            QTQAA++FK+P      PN G+ A+     A  +D+++VD+TGVE +DI+LVMTQAGV +++AV ALKA DGDIVSAIMELT
Sbjct:  128 QTQAAQRFKMPDVTSMLPNAGSEATMAPL-AEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.158e-17
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = -3
Query:   93 QTQAAEQFKVPP-----PNTGNVASKPESSAMVQ---DDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q QAA++FK+P      PNT       E++ + Q   DDE+VDETGVE KDI+LVMTQAGV R +AVKALK ++GDIVSAIMELT
Sbjct:  131 QAQAAQRFKMPDVASMIPNTDG----SEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.980e-15
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKVP     NV    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:  136 QLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.620e-14
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  135 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
The following BLAST results are available for this feature:
BLAST of DC887580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NACA_PINTA4.587e-2476.92Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH4.587e-2479.75Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH8.097e-2171.43Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH1.293e-1860.24Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH3.184e-1758.54Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH4.158e-1760.00Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI2.980e-1555.70Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE5.620e-1453.16Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR7.340e-1453.16Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE7.340e-1453.16Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionDC887580 EIC Citrus sinensis cDNA clone EIC0587 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887580 ID=DC887580; Name=DC887580; organism=Citrus sinensis; type=EST; length=325bp
ATTGTAAATGGTAACAGCGAGAAAAAAAAAAAAAAGATTTCCTTATGGGA
TCATTCAGCAGAGCAACATAATTAAGAAAGTGACCATCAATTTGTTAGCT
CCATAATGGCAGAAACGATGTCACCATCTGCGGCTTTGAGTGCTTTCACA
GCCCTTGACCTCGGTACCCCAGCTTGAGTCATTACCAACTCAATGTCCTT
TGGCTCCACACCAGTCTCATCTACTTCTTCGTCATCTTGAACCATGGCCG
ATGACTCAGGCTTTGATGCCACATTACCTGTGTTAGGAGGAGGGACCTTG
AACTGCTCTGCAGCCTGAGTTTGCA
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