CN184928

Overview
NameCN184928
Unique NameCN184928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2454 contig Csv1_Contig2454:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.198e-86
Identity = 139/158 (87.97%), Postives = 147/158 (93.04%), Query Frame = 1
Query:  205 MGVSSDPNLDGLDEQQKRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            MG SSDP  DG DEQQKRSEIYTYE+PWHIYAMNWSVRRDKKYRLAI SLLEQYPNRVEIVQLD+S GEIR+DPNLSFEHPYPPTKTIFIPDKECQ+PDLLATSSDFLR+WRI+D+  RVELKS LN NKNSE+CGPLTSFDWNEAEPRRIGTSS DT
Sbjct:    1 MGTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDT 158          

HSP 2 Score: 45.0542 bits (105), Expect = 1.198e-86
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  656 LGRLVSTPTCTIWDIEREAVDTQLIAH 736
            +G   +  TCTIWDIEREAVDTQLIAH
Sbjct:  151 IGTSSTDTTCTIWDIEREAVDTQLIAH 177          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.434e-78
Identity = 127/158 (80.38%), Postives = 142/158 (89.87%), Query Frame = 1
Query:  205 MGVSSDPNLDGLDEQQKRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            M  SSD   +G +EQ KRSEIYTYE+PW IYAMNWS+RRDKKYRLAI SL+EQYPNRVEIVQLD+S GEIR+DPNL FEHPYPPTKT FIPDKECQ+PDLLATSSDFLR+WRISD++ RVELKS L+ +KNSE+ GP+TSFDWNEAEPRRIGTSSIDT
Sbjct:    1 MVTSSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDT 158          

HSP 2 Score: 42.743 bits (99), Expect = 1.434e-78
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  680 TCTIWDIEREAVDTQLIAH 736
            TCTIWDIERE VDTQLIAH
Sbjct:  159 TCTIWDIEREVVDTQLIAH 177          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.275e-44
Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 1
Query:  253 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            KR EIY YE+PW +YAMNWSVR DK++RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDT
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLE--CLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDT 143          

HSP 2 Score: 23.0978 bits (48), Expect = 5.275e-44
Identity = 15/38 (39.47%), Postives = 16/38 (42.11%), Query Frame = 2
Query:  656 LGRLVSTPTCTIWDIEREA-----------VDTQLIAH 736
            LG      TCTIW +E              V TQLIAH
Sbjct:  136 LGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAH 173          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.275e-44
Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 1
Query:  253 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            KR EIY YE+PW +YAMNWSVR DK++RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDT
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLE--CLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDT 143          

HSP 2 Score: 23.0978 bits (48), Expect = 5.275e-44
Identity = 15/38 (39.47%), Postives = 16/38 (42.11%), Query Frame = 2
Query:  656 LGRLVSTPTCTIWDIEREA-----------VDTQLIAH 736
            LG      TCTIW +E              V TQLIAH
Sbjct:  136 LGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAH 173          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.265e-42
Identity = 74/142 (52.11%), Postives = 100/142 (70.42%), Query Frame = 1
Query:  253 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            ++  IYTY SPW IY ++WS R ++ +RLAI S LE Y NRV+++QL++ T +        FEHPYPPTK ++IPDK   +PDLLAT+ D+LR+W +    R ++LKSLL  N  SE+C PL+SFDWNE +P  + TSSIDT
Sbjct:    2 EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEVV--CGFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCAPLSSFDWNETDPSLLATSSIDT 140          

HSP 2 Score: 31.187 bits (69), Expect = 1.265e-42
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  680 TCTIWDIEREAVDTQLIAH 736
            TCTIW+IE     TQLIAH
Sbjct:  141 TCTIWNIETGQAKTQLIAH 159          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.325e-41
Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  241 DEQQKRSEIYTYESPWHIYAMNWS-VRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPD--KECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            D   +     TY+SP+ +YAM +S +R    +R+A+ S LE Y NR++I+  D  +  ++  PNLSFEHPYPPTK +F P   +     DLLA+S DFLR+W I+++   VE  S+LN +K SE+C PLTSFDWN+ EP+R+GT SIDT
Sbjct:    7 DSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDT 155          

HSP 2 Score: 38.891 bits (89), Expect = 2.325e-41
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  656 LGRLVSTPTCTIWDIEREAVDTQLIAH 736
            LG      TCTIWDIE+  V+TQLIAH
Sbjct:  148 LGTCSIDTTCTIWDIEKSVVETQLIAH 174          
BLAST of CN184928 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 9.832e-12
Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  274 YESPWHIYAMNWSVRRDKKYR---LAIASLLEQYPNRVEIVQL---DDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPD--LLATSSDFLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 678
            Y +PW  +A++W   +  KY    +A+ SL E+  N +++++L   DD    +      + +  YP TK ++ P       D  LLA++   LR+W+   E   D  +  ++ L+ +  +    PLTSFDW + +P  I  SS+DT
Sbjct:   47 YNAPWIPFALDWL--KQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEK-AQAATDLEYPVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDT 189          

HSP 2 Score: 30.8018 bits (68), Expect = 9.832e-12
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  680 TCTIWDIEREAVDTQLIAH 736
            TCT+WDI  +   TQLIAH
Sbjct:  190 TCTVWDIVAQQSKTQLIAH 208          
The following BLAST results are available for this feature:
BLAST of CN184928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LWD1_ARATH1.198e-8687.97WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH1.434e-7880.38WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE5.275e-4457.04DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN5.275e-4457.04DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI1.265e-4252.11DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
TTG1_ARATH2.325e-4148.32Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
YBE8_SCHPO9.832e-1229.45Uncharacterized WD repeat-containing protein C17D1... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006G02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184928 ID=CN184928; Name=CN184928; organism=Citrus sinensis; type=EST; length=737bp
GAGGGCAATTTCTCGGAATCAATAAGTTTCGTTTTCACACGTGGGATCCA
ATTGGGTCCCTTTAGCAAATTGTTTACATTAAAGCTTGACTCGGCCGAAA
TCATTTATAGCGTTCGATCTTTTGACTTCTCCTCAGCCCTAAGCCTCTCT
TCAATCAATAATATCCACAACCCATTTCGTAGTTGTTGAGTTGAAGTGAG
AGTAATGGGCGTGAGTAGTGACCCGAATCTCGACGGGTTGGACGAGCAGC
AAAAAAGATCCGAGATCTATACCTATGAGTCACCGTGGCACATCTACGCC
ATGAACTGGAGCGTCCGTCGCGACAAGAAGTACCGACTCGCTATCGCCAG
CCTCCTCGAGCAGTACCCGAACCGGGTCGAAATTGTTCAGCTGGATGATT
CCACTGGCGAGATCCGTGCCGACCCCAACCTCTCTTTCGAACACCCGTAC
CCGCCTACCAAAACCATTTTCATACCCGACAAGGAGTGCCAAAAACCCGA
CCTTTTGGCCACCTCCAGCGATTTCCTCCGCGTGTGGAGAATCTCCGACG
AGGACCGGCGCGTGGAGCTCAAGAGTTTGTTGAATGGTAACAAGAACAGC
GAATACTGCGGCCCGCTGACCTCGTTTGACTGGAACGAAGCGGAACCGAG
GCGAATTGGGACGTCTAGTATCGACACCCACGTGTACGATTTGGGATATC
GAGAGAGAAGCCGTCGATACGCAGCTTATCGCTCACG
back to top