DC887575

Overview
NameDC887575
Unique NameDC887575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887575 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  166 IVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTVLSVLNMGAFLLVSKWYTYKRPVG 333
            +V  I+ KNG  GWIPDNLNRGHL YFF+LL  LS LN   +L +SK Y YK+ VG
Sbjct:  512 VVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVG 567          
BLAST of DC887575 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = -1
Query:  166 IVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTVLSVLNMGAFLLVSKWYTYKRPVG 333
            +VT ++   G  GWI  NLN GHL YFFWLL  LS LN   +L ++KWYTYK+  G
Sbjct:  512 LVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567          
The following BLAST results are available for this feature:
BLAST of DC887575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PTR1_ARATH2.105e-1360.71Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH1.782e-1253.57Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionDC887575 EIC Citrus sinensis cDNA clone EIC0579 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887575 ID=DC887575; Name=DC887575; organism=Citrus sinensis; type=EST; length=333bp
GCTTTGNTTCCTTGAGGTTCACTTTTTTTCTGACGACAACGATTACTCTG
TTACACAACATACAAAAACACTACAACGAAGAGAATGCATTTCTTTAAGC
AGAATGAACTTATTTACAAAACCAGAGCAGATATATTGAAGCTTACAACA
CGATCAACGAAGACTCCCCACTGGCCTTTTATATGTATACCACTTTGACA
CCAAAAGGAAAGCTCCCATGTTCAATACACTCAGCACCGTTAACAACCAG
AAGAAGTAATGGAGGTGACCACGGTTCAAGTTATCCGGTATCCATCCAAG
ATTCCCGTTCTTGGTACTTATCGAGGTAACAAT
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