CN184910 | Citrus Genome Database

Overview


Name	CN184910
Unique Name	CN184910
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	446

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2038	contig	Csv1_Contig2038:73..519.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.296e-15
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHMSK
Sbjct:  302 KAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

HSP 2 Score: 26.1794 bits (56), Expect = 6.296e-15
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGD+RSSIFDA
Sbjct:  290 FVGDNRSSIFDA 301

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.063e-14
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = -3

Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HMSK
Sbjct:  302 KAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337

HSP 2 Score: 26.1794 bits (56), Expect = 1.063e-14
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGD+RSSIFDA
Sbjct:  290 FVGDNRSSIFDA 301

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.795e-14
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHM+  Q
Sbjct:  300 KAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337

HSP 2 Score: 27.335 bits (59), Expect = 1.795e-14
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  288 FVGDSRSSIFDA 299

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.030e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            +AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHM+ TQ
Sbjct:  303 QAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340

HSP 2 Score: 26.9498 bits (58), Expect = 3.030e-14
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            F+GDSRSSIFDA
Sbjct:  291 FIGDSRSSIFDA 302

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.936e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHMSKTQ
Sbjct:  301 KAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338

HSP 2 Score: 25.7942 bits (55), Expect = 3.936e-14
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  289 FIGDNRSSIFDA 300

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.937e-14
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM+KTQ
Sbjct:  300 KAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337

HSP 2 Score: 27.335 bits (59), Expect = 3.937e-14
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  288 FVGDSRSSIFDA 299

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.631e-14
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = -3

Query:  301 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 411
            KAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHM+ T
Sbjct:  303 KAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339

HSP 2 Score: 25.7942 bits (55), Expect = 8.631e-14
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  291 FIGDNRSSIFDA 302

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.633e-14
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLV+WYDNEWGYS RV+DLI HM+KTQ
Sbjct:  300 KAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337

HSP 2 Score: 27.335 bits (59), Expect = 8.633e-14
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  288 FVGDSRSSIFDA 299

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.633e-14
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = -3

Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLV+WYDNEWGYS RV+DLI HM+KTQ
Sbjct:  300 KAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337

HSP 2 Score: 27.335 bits (59), Expect = 8.633e-14
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  288 FVGDSRSSIFDA 299

[Close]

BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.639e-14
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -3

Query:  307 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 411
            KAGIALSK FVKLVSWYDNEWGYS+RV+DLI HM+
Sbjct:  289 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323

HSP 2 Score: 27.335 bits (59), Expect = 8.639e-14
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1

Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  277 FVGDSRSSIFDA 288

The following BLAST results are available for this feature:

BLAST of CN184910 vs. ExPASy Swiss-Prot

BLAST of CN184910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38


Match Name	E-value	Identity	Description
G3PC_ARATH	6.296e-15	94.44	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_SINAL	1.063e-14	91.67	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_ANTMA	1.795e-14	84.21	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_PINSY	3.030e-14	84.21	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_RANAC	3.936e-14	86.84	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PX_HORVU	3.937e-14	84.21	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_GINBI	8.631e-14	83.78	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_ORYSJ	8.633e-14	78.95	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_ORYSI	8.633e-14	78.95	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_TOBAC	8.639e-14	85.71	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0006F13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F13, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184910 ID=CN184910; Name=CN184910; organism=Citrus sinensis; type=EST; length=446bp
GAGGAACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTT
TCCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAA
CTCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCA
GGTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACC
CTCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACT
TAGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTG
GGTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCC
ACTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCA
ATACCAGCCTTGCATCAAAGATACTTGACCTACTGTCACCAACAAA