CN184900

Overview
NameCN184900
Unique NameCN184900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9575 contig Csv1_Contig9575:1135..1861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   + I+F P  +DDP +R+PDI +AK LLGWEP V L +GL K ++ F + +
Sbjct:  291 GSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSREL 393          
BLAST of CN184900 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  416 GKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 724
            G+QTR+FQ+VSDLV GL+ LM      P NLGNP E ++++ A+++++ +    +I F    +DDP +RKPDI +AK LLGWEP V L +GL K +  FR+ +
Sbjct:  294 GEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
The following BLAST results are available for this feature:
BLAST of CN184900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UXS1_RAT7.076e-2450.49UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB7.076e-2450.49UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE7.076e-2450.49UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN7.076e-2450.49UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE2.059e-2349.51UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR5.071e-2246.60UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184900 ID=CN184900; Name=CN184900; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTGGAACAAAGAAATGTGGTCTACTGCCTATTTTC
AGTAACAAACTCCTCTACTACAATCGGAAGATAAGAACTGGATAAATTGT
AACGGTAATGCTTGCTGTCTATCAAACTCAGGATCAGGATAACATAGAAA
ATTACAAGAAAATAGGAAAACGAATTTATATCAGGGCACCTTGAAATCTA
AGCCAGATATAGATAACAAAGGGCTCATCTGCTGCTACCGCTGCTGCTGT
TGAATGTGGCTACCATATGTTGTTCTCGAGGAGGAAAAAGGGGGAATTGT
TTTCAACCAAACATTTCCCGTTCCTTTGATCACTCTAAGAAGTACACGGG
CCAAGTTACGCCGATGACGTGGTGTCGGGGGTGGCACCTGCACCACCTTC
CTTGTGGTCACCAAAGATACGCTGCCGGAAATCTTTGACCATCTTGGGGA
GACCCTTCCTCAATGATACCTTTGGTTCCCAACCAAGAAGCTCTTTAGCC
CTTGAGATATCAGGCTTCCTCTTGTGTGGATCATCTTCAGTGTTGGGCCT
GAACTCTATTTTTGCATTTGGGTCAATTGTTTCCTGGACCACCTGAGCAA
GTTCAAGCATGGTAAATTCACCCGGATTTCCAAGATTAAAAGGACCCACA
TGTTCTCCCTCCATGAGGCGCATCAGACCCTCCACCAAATCAGAAACAAA
TTGGAAACTCCTAGTCTGCTTCCCATC
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