CN184898

Overview
NameCN184898
Unique NameCN184898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   74 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 463
            D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +C++ +E+ +L  H+  +CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVC 135          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 2
Query:   89 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 571
            +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M++  L  HK  +C +R V C FC+  +    L  H+  CG+RTELC  C ++I  R    H   C    +  +G    + A E +   H      P N+++
Sbjct:    7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQHRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 60/227 (26.43%), Postives = 99/227 (43.61%), Query Frame = 2
Query:   74 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC----------TGVPENTVGSS-------------RNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH*QQNRG 685
            D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +C++ +E+ +L  H+  +CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C            +P N    S             R + A +      RRP     ++ +  R      IT    +  +LF  ++ +      ++NRG
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGREGEEKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMRLPRRPLRAFESDVFHNRTTNQRNITAQVSIQNNLFEEQERQ------ERNRG 226          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   74 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 478
            D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH++ CG RTELC  C R + ++E   H + C  V E
Sbjct:    7 DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELQTHPAVCGRVEE 140          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   74 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 478
            D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH++ CG RTELC  C R + ++E   H   C  V E
Sbjct:    7 DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE 140          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   71 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC-TGVPENTVGSSRNVRAAESDQGAHR 538
            +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C +C++ +E+  L  H+  +CP R+  C  C+  L  + L +H++ CG RTELC  C R + +++   H   C   V E  V ++    A +   G  R
Sbjct:    6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVLVKDLKTHPEVCGRDVEEKRVEAAMPPNAYDESWGPDR 161          
BLAST of CN184898 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 2
Query:   86 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFP--LPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFY 571
            ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H  V C+ C +++ +  L  H+ ++C +R V C FC+    L  VDL EH   CG +TELC  C +++ LR    H   C    +  +   +++   ES+   H      P N+++
Sbjct:    6 QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEHH--CGQQTELCPDCGQHVMLRVLARHREECQR-EQLRLQKGKSIPVPESNICCHYCNQMIPGNKYF 166          
The following BLAST results are available for this feature:
BLAST of CN184898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRAD1_MACFA4.598e-2333.85TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_HUMAN6.005e-2332.30XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
TRAD1_HUMAN7.842e-2326.43TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_RAT1.024e-2234.81TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MOUSE1.338e-2234.81TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_BOVIN1.338e-2231.85TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_BOVIN6.870e-1930.49XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184898 ID=CN184898; Name=CN184898; organism=Citrus sinensis; type=EST; length=857bp
GAGGCTTCTATCTCTCCCTAAAAAGAGCTACGACGTCGAATTGATTGATC
GTATCGCGATGGCAATGACTTCTGATGAAACCACAAAAATATGCAGTCAC
TGTGACAGAGCTATACCGTCTTCAAATATTGATTTGCATTTTGCACATTG
CTCGCGGAATCTGGAACGATGTAAAGTATGTGGTGACATGGTTCCAAGGA
AATATGCTGAGGAGCACTTCTTAAATACCCATGCCCCGGTGGCCTGTTCA
CAGTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGTGA
AAAGTGCCCGCAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACTGC
CTGCAGTTGATCTGGCCGAGCATCAGGAAGTCTGTGGGAATCGCACAGAA
CTTTGTCATCTGTGTAACAGATATATTAGGTTGCGAGAAAGATATAACCA
TGAAAGTAGGTGCACAGGTGTCCCAGAAAACACTGTTGGATCTTCCAGGA
ATGTAAGGGCAGCTGAAAGTGACCAAGGGGCTCACAGAAGGCCGGCACCC
CCGCCGCCAAACGAGTTTTATCGGAAACGATTTCTACTTACCATAGCAAT
AACAGGCATTGCTGTTCTATTAGGATCTCTTTTTTTCCCGAGAAAGACAG
AGACTAGTCAAGTGCATTAGCAGCAGAATAGAGGATAAACACGGGAGGAG
TATATATTTCGGTGACAAACCAATGTATTCCATTTATCTGTACCTAGATC
ATCTAAAAGCATGTACTGCTATGACCTCACTGAACTCATTGGCATTTTGG
GCATATGTTGAACGGCTATGCAACATTTGTTTCTTGCTTTTAAAAAAAAA
AAAAAAA
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