CN184895

Overview
NameCN184895
Unique NameCN184895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184895_ssr651 microsatellite CN184895_ssr651:651..668. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            MGKGTGSFGKRRNK+HTLCVRCGRRSFHIQKSRCSACAYPAAR R YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTEA PR K  A+S+
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGTGSFGKRRNK+HTLCVRCGRRSFHIQKSRCSACAYPAAR R YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTEA PR K VA+S+
Sbjct:    1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            MGKGTGSFGKRRNK+HTLCVRCGRRSFHIQKSRCSACAYPAAR R YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGT+A PR K  A+SS
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = -2
Query:  231 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRK 494
            M KGT SFGKR NKTHTLC RCGR S+HIQKS C+ C YPAA++R YNWSVKA RRKTTGTGRM++L+ V RRF++ FREGT+A P+K
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPKK 88          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCG +++H+QKS C  C YPA R RKYNWS KA RR TTGTGRMR+++ V RRF++ FREGT   PR+  VAASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCG +++H+QKS C  C YPA R RKYNWS KA RR TTGTGRMR+L+ V RRF+  FREGT   P++  VAASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCG +++H+QKS C  C YPA R RKYNWS KA RR TTGTGRMR+L+ V RRF+  FREGT   P++  VAASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCG +++H+QKS C  C YPA R RKYNWS KA RR TTGTGRMR+L+ V RRF+  FREGT   P++  VAASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCG +++H+QKS C  C YPA R RKYNWS KA RR TTGTGRMR+L+ V RRF+  FREGT   P++  VAASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFGKRRNKTHTLC RCGR S+HIQKS+C+ C YPAA++R Y+WSVKA RRKTTGTGRMR+L+ V RRF++ F+EG    P  K   ASS
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG---KPTPKKAVASS 92          
The following BLAST results are available for this feature:
BLAST of CN184895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL373_ARATH1.558e-4387.3760S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL372_ARATH1.558e-4387.3760S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_ARATH1.558e-4387.3760S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL371_DROME1.616e-3271.59Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37_ICTPU6.139e-3267.3760S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_RAT8.018e-3267.3760S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE8.018e-3267.3760S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN8.018e-3267.3760S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]
RL37_BOVIN8.018e-3267.3760S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]
RL37_SPOFR5.197e-3167.3760S ribosomal protein L37 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184895 ID=CN184895; Name=CN184895; organism=Citrus sinensis; type=EST; length=786bp
GAGGTTTTAATCAAAAACAAGGATCTATGATATTGATTTACCTTAGAATA
ATAAAAGAGAGGATTAAAAAATGAATTCAGTAAAAATAATAACTCTCCAA
TATTTAAAACTTGCGAATGATAATAAGTAACACTTTGTGAACCAAAATTC
TTGTTTGCAAACATACAAATAACAAGATAAAACAGACTATCATTTCCTTC
ATAAGCTTAAGAAGATGCAGCCACATTCTTCTTCCTTGGAGCTGCTTCAG
TACCTTCTCTGAAGTTACTCTTGAACCTGCGTGGCACATGACGAAGGTAC
CTCATGCGTCCGGTTCCAGTGGTCTTTCGGCGGATGGCCTTCACACTCCA
GTTATATTTTCTAACACGGGCAGCGGGATAAGCGCAAGCGCTGCATCGGC
TCTTCTGGATGTGGAAACTCCTGCGACCGCATCTCACGCACAGTGTGTGA
GTCTTGTTCCTTCTCTTACCAAAGCTTCCGGTTCCTTTCCCCATTTCTTC
TTCGGTTGCGGAAACAAATTAAAAAAAATAAAAATTCCTAGACCCTAATC
TGCTTTGTTCCAATTATAAGAGAATCGCTCTCAGACATATATATGTAGCT
GATTGCTGATAGCAGCATACCATCCCATTAGAAATTAACAGAAAATATAA
AAGAAGAAGAAGAAGAAGGGGAAAAAAAAAAAGGATAGATGATCACTATA
CTGTTGTAGTTGTGGCAGCACCAGTTGCATTTCCACTAGCCTCACCGGCC
CCGGCACCGGAACTAGTGCCACTAGATTGACCACTA
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