CN184890

Overview
NameCN184890
Unique NameCN184890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3357 contig Csv1_Contig3357:89..363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.311e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            MGQQSLIYSFVARGTVILAEYTEF GNFTS+A+QCLQKLP++NNKFTYNCDGHTF YL D GFTYCVV +E
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIE 71          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.921e-31
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   46 VRVLR-MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            +RV R MGQQ+LIYSFVARGTVIL EYTEF GNFT++A+QCLQKLP++NNKFTYNCDGHTF YLV+ GFTYCVVAVE
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVE 136          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.510e-30
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTF YLV+ GFTYCVVAV+
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVD 71          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.196e-30
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTF YLV+ GFTYCVVAV+
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVD 71          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.304e-26
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            M QQSL YSF+ARGTVIL E+T+F GNFTS+A+Q L+ LP++NNKFTYNCDGHTF  LV+ GFTYCVVAV+
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVD 71          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.075e-25
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLP-ATNNKFTYNCDGHTFYYLVDKGFTYCVVA 267
            MGQ+S IYSFVARGT+ILAEYTEFTGNF SIA+QCLQKLP ++N+KFTYNCD HTF +LV+ G+ YCVVA
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVA 70          
BLAST of CN184890 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.479e-22
Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   61 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFYYLVDKGFTYCVVAVE 273
            M Q+ LIYSFVA+GTV+LAE+T ++GNF++IA QCLQKLP  ++K+TY+CDGHTF +LVD GF + VVA E
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADE 71          
The following BLAST results are available for this feature:
BLAST of CN184890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VA726_ARATH1.311e-3185.92Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH2.921e-3181.82Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH5.510e-3083.10Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH7.196e-3083.10Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH6.304e-2673.24Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH1.075e-2577.14Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH2.479e-2264.79Vesicle-associated membrane protein 727 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184890 ID=CN184890; Name=CN184890; organism=Citrus sinensis; type=EST; length=275bp
GGCAAATCTAGCATTTCTTTAGTTTCCCTCTCTCCGATCCCACGGGTTAG
GGTTTTGAGGATGGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAG
GCACGGTGATCCTCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGC
ATCGCATCGCAATGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCAC
CTACAACTGCGATGGCCACACCTTCTATTACCTCGTTGATAAAGGCTTCA
CCTATTGTGTGGTTGCTGTTGAATC
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